New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395763 =	188 (1.150)	35 (0.210)	2/134	24.4	0.17	intergenic (+575/‑356)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1396064	161 (0.660)					intergenic (+876/‑55)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
Rejected: Position hash score below cutoff.

CACGCCGCAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1395805‑1395763 ............................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGCAGGCGT  <  NC_014034/1396064‑1396021                                            |||||||||||||||||||||||||||||||||                                             gacgtggcgGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGG                     <  2:973888/92‑1 (MQ=0) gacgtggcgGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGG                     <  1:1657973/92‑1 (MQ=0)  gcgtggcgGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGG                    <  1:2290327/93‑1 (MQ=1)   ggtggggGGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                   <  2:1299302/94‑1 (MQ=0)   cgtggcgGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                   <  1:3586121/94‑1 (MQ=1)   cggggcggtTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                   <  2:1446/92‑1 (MQ=0)    gtggcgGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGA                  <  1:483853/95‑1 (MQ=1)      ggcgGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGC                >  1:3386612/5‑101 (MQ=1)         gGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             >  2:1090364/2‑101 (MQ=1)         gGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             <  1:4469845/100‑1 (MQ=1)          gtTTTCAATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG            <  2:3612259/99‑1 (MQ=1)          GGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG            <  2:2645958/101‑1 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC           >  1:716399/1‑101 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGCCGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCa          <  2:290430/101‑2 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCCTAGCCATGTTTCGATCAACGCCCCCCCGGGGGGAGCGACGCa          >  1:3657638/1‑100 (MQ=0)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCa          >  1:180527/1‑100 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCa          >  1:1343899/1‑100 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACCGACGCCATACCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCa          <  2:804286/101‑2 (MQ=0)            TTTCGACCCACGCCCCCGGGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCa          <  1:4887194/101‑2 (MQ=0)               cggTCCCCGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaacc       <  2:2397628/98‑5 (MQ=0)               CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGCGCGACGCaacc       >  2:1666920/1‑97 (MQ=0)               CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaacc       <  1:2327536/101‑5 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaacc       >  2:2755801/1‑97 (MQ=1)                GATCCCCCCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccg      <  1:1205380/101‑6 (MQ=0)                GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGCGCGACGCaaccg      >  1:1431807/1‑96 (MQ=0)                GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccg      >  2:4132904/1‑96 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccg      >  2:4939102/1‑96 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccgc     <  2:2637875/101‑7 (MQ=1)                  TCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccgcg    <  1:308969/101‑8 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccgcga   >  1:1069576/1‑93 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccgcga   >  2:409452/1‑93 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccgcga   >  2:4033074/1‑93 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccgcga   >  2:1455824/1‑93 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccgcga   >  1:4696864/1‑93 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCaaccgcgag  >  1:4689136/1‑92 (MQ=0)                                            |||||||||||||||||||||||||||||||||                                             CACGCCGCAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1395805‑1395763 ............................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGCAGGCGT  <  NC_014034/1396064‑1396021 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG