New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395965 =	187 (1.140)	35 (0.210)	2/134	24.4	0.17	intergenic (+777/‑154)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1397600	154 (0.630)					coding (1482/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GATCGAGGGCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..............................................................................  <  NC_014034/1396008‑1395965 .............................................................................ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGC  <  NC_014034/1397600‑1397556                                             |||||||||||||||||||||||||||||||||                                              aagacgtGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGG                       <  1:2937617/94‑1 (MQ=0)   gacgtGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGG                     <  2:973888/96‑1 (MQ=0)   gacgtGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGG                     <  1:1657973/96‑1 (MQ=0)    gcgtGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGG                    <  1:2290327/97‑1 (MQ=1)     ggtgggggGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                   <  2:1299302/93‑1 (MQ=0)     cgtGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                   <  1:3586121/98‑1 (MQ=1)     cgGGGCGGTTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                   <  2:1446/99‑1 (MQ=0)      gtGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGA                  <  1:483853/99‑1 (MQ=1)        GGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGC                >  1:3386612/1‑101 (MQ=1)           ggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             >  2:1090364/3‑101 (MQ=1)           ggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             <  1:4469845/99‑1 (MQ=1)            gtTTTCAATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG            <  2:3612259/99‑1 (MQ=1)            gGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG            <  2:2645958/100‑1 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGc           >  1:716399/1‑100 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGCCGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGca          <  2:290430/101‑3 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCCTAGCCATGTTTCGATCAACGCCCCCCCGGGGGGAGCGACGca          >  1:3657638/1‑99 (MQ=0)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGca          >  1:180527/1‑99 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGca          >  1:1343899/1‑99 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACCGACGCCATACCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGca          <  2:804286/101‑3 (MQ=0)              TTTCGACCCACGCCCCCGGGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGca          <  1:4887194/101‑3 (MQ=0)                 cggTCCCCGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaacc       <  2:2397628/98‑6 (MQ=0)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGCGCGACGcaacc       >  2:1666920/1‑96 (MQ=0)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaacc       <  1:2327536/101‑6 (MQ=1)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaacc       >  2:2755801/1‑96 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGCGCGACGcaaccg      >  1:1431807/1‑95 (MQ=0)                  GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccg      >  2:4939102/1‑95 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccg      >  2:4132904/1‑95 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccgc     <  2:2637875/101‑8 (MQ=1)                    TCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccgcg    <  1:308969/101‑9 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccgcga   >  1:1069576/1‑92 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccgcga   >  2:409452/1‑92 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccgcga   >  2:4033074/1‑92 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccgcga   >  2:1455824/1‑92 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccgcga   >  1:4696864/1‑92 (MQ=0)                      CACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcaaccgcgag  >  1:4689136/1‑91 (MQ=0)                                             |||||||||||||||||||||||||||||||||                                              GATCGAGGGCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..............................................................................  <  NC_014034/1396008‑1395965 .............................................................................ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGC  <  NC_014034/1397600‑1397556 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 37 ≤  ATCG