New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1396028 =220 (1.300)54 (0.320) 13/138 16.3 0.21 intergenic (+840/‑91) RCAP_rcc01306/RCAP_rcc01307 Cas2 family CRISPR‑associated protein/hypothetical protein
?NC_014034 = 1396198 195 (0.800)coding (80/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

AGATGCGCCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGG...............................................................................  <  NC_014034/1396073‑1396028
.............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGTGGCGGCGCG  <  NC_014034/1396198‑1396151
                                              |||||||||||||||||||||||||||||||                                                
gatcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                          <  2:4341196/92‑1 (MQ=0)
 atcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGG                         >  2:4330042/9‑101 (MQ=0)
  tcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                        <  1:4566272/94‑1 (MQ=1)
  tcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                        <  2:1611318/94‑1 (MQ=1)
   catcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                       >  2:417589/7‑101 (MQ=1)
   catcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                       >  2:1904474/7‑101 (MQ=1)
   catcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                       <  2:2479082/95‑1 (MQ=1)
     tcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGCGAGC                     <  1:4887783/97‑1 (MQ=1)
     tcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCCGGGGGTTTCGATCCACGCCCCCGCGGGGGGAGC                     >  1:4308045/5‑101 (MQ=2)
     tcgaTGTTTCGACCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                     <  2:4504788/97‑1 (MQ=1)
      cgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                    >  2:1633058/4‑101 (MQ=1)
       gaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGGTCCACGCCCCCGCGGGGGGGGCGA                   >  2:2349862/3‑101 (MQ=0)
       gaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                   >  1:3137738/3‑101 (MQ=1)
       gaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                   >  1:2101766/3‑101 (MQ=1)
       gaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                   <  1:1524598/99‑1 (MQ=1)
        attTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                  <  2:1928821/98‑1 (MQ=1)
        aTGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCCCGGGGGGAGCGAC                  <  1:2483848/100‑1 (MQ=0)
        aTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                  <  1:26221/100‑1 (MQ=1)
        aTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                  <  1:2201262/100‑1 (MQ=1)
         TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                 <  1:4298074/101‑1 (MQ=1)
         TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                 >  2:3097697/1‑101 (MQ=1)
         TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                 <  1:4108821/101‑1 (MQ=1)
          GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC                <  2:2608704/101‑1 (MQ=1)
          GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC                >  2:2927946/1‑101 (MQ=1)
          GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC                >  1:1111566/1‑101 (MQ=1)
           TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCA               >  1:3873980/1‑101 (MQ=1)
           TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCA               >  1:4694603/1‑101 (MQ=1)
           TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCCCGGGGGGGGCGACGCg               >  1:2752067/1‑100 (MQ=0)
            TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAG              >  2:5020392/1‑101 (MQ=1)
            TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAG              <  2:4694280/101‑1 (MQ=1)
            TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAG              >  1:2523865/1‑101 (MQ=1)
            TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAG              >  2:2016318/1‑101 (MQ=1)
             TCGATCCCCGCCCCCGCGGGGGGAGCGACGCGGTAGCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGC             <  2:2011300/101‑1 (MQ=0)
             TCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGC             <  1:4118330/101‑1 (MQ=1)
             TCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGC             <  1:2233440/101‑1 (MQ=1)
              CGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCG            <  1:3940410/101‑1 (MQ=1)
               GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGg           >  2:1007073/1‑100 (MQ=1)
               GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGg           >  1:3172332/1‑100 (MQ=1)
               GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGg           >  2:2527541/1‑100 (MQ=1)
               GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGg           >  1:2234570/1‑100 (MQ=1)
                ATCCGCCCCCCCGCGGGGGGAGCGACGCGGTTTCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgc          <  1:1896428/101‑3 (MQ=0)
                ATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgc          <  1:891788/101‑3 (MQ=1)
                ATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgc          <  1:1698323/101‑3 (MQ=1)
                ATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgc          <  1:3481515/101‑3 (MQ=1)
                 TCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgca         >  1:4013275/1‑98 (MQ=1)
                  CCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcac        >  1:2882074/1‑97 (MQ=1)
                  CCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcac        <  1:3463139/101‑5 (MQ=1)
                    ACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcacca      >  1:293838/1‑95 (MQ=0)
                    ACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcacca      >  1:31130/1‑95 (MQ=0)
                     CGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccag     <  1:4089478/101‑8 (MQ=0)
                      GCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccaga    <  2:4739912/101‑9 (MQ=0)
                       CCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccagaa   <  1:4034998/101‑10 (MQ=0)
                       CCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccagaa   >  2:4900408/1‑92 (MQ=0)
                        CCCCGCGGGGGGAGCGACGCGGTATCGGTGNTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccagaag  <  1:1504003/101‑11 (MQ=0)
                                              |||||||||||||||||||||||||||||||                                                
AGATGCGCCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGG...............................................................................  <  NC_014034/1396073‑1396028
.............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGTGGCGGCGCG  <  NC_014034/1396198‑1396151

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG