BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396031 =	181 (1.100)	39 (0.240)	4/134	22.3	0.17	intergenic (+843/‑88)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
*	?	NC_014034	= 1397465	205 (0.840)	39 (0.240)	4/134	22.3	0.17	coding (1347/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


AGATGCGCCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1396073‑1396031


............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATGTCGCGGACG  <  NC_014034/1397465‑1397422


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tcttcgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGG                     >  1:1663391/11‑101 (MQ=0)


 cttcgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                    >  2:4315229/10‑101 (MQ=0)


 cttcgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                    >  2:559775/10‑101 (MQ=0)


 cttcgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                    >  1:4959908/10‑101 (MQ=0)


  ttcgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGg                   >  1:2141492/9‑100 (MQ=0)


  ttcgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGg                   >  2:4572235/9‑100 (MQ=0)


    cgccccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:1579828/95‑1 (MQ=1)


    cgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:1481213/7‑101 (MQ=1)


    cgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:4884037/7‑101 (MQ=1)


    cgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  1:4200446/7‑101 (MQ=1)


     gacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  2:2562468/6‑101 (MQ=1)


     gacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  1:2544229/6‑101 (MQ=1)


     cccccGTTTCGATCCACGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                <  2:2184247/96‑1 (MQ=0)


      ccccGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               <  1:2073811/97‑1 (MQ=0)


        ccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACA             >  1:631125/3‑101 (MQ=1)


         cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAT            >  2:3997987/2‑101 (MQ=1)


         cGTTTCGACCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAT            <  1:2967903/100‑1 (MQ=0)


          GTTTCGATCCACGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATc           <  1:4187055/101‑2 (MQ=1)


           TTTCGATCCACGCCCCCGCGGGGGGAGCGACAATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCTCGCGGGGGGAGCGACATcc          >  1:2841709/1‑99 (MQ=0)


           TTTCGACCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcc          <  2:328716/101‑3 (MQ=1)


            TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcct         >  1:4619179/1‑98 (MQ=1)


             TCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctg        >  2:559334/1‑97 (MQ=1)


              CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       >  1:648705/1‑96 (MQ=1)


              CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       >  2:4201886/1‑96 (MQ=1)


              CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       >  1:2597771/1‑96 (MQ=1)


              CGACCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       <  1:2152197/101‑6 (MQ=0)


              CGACCCACCCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       <  2:584446/101‑6 (MQ=0)


               GATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgtt      >  1:3547305/1‑95 (MQ=0)


                ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGGGCGACATcctgttc     >  1:3427133/1‑94 (MQ=0)


                ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttc     >  2:917367/1‑94 (MQ=0)


                ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttc     >  1:4626638/1‑94 (MQ=0)


                ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttc     >  1:310441/1‑94 (MQ=0)


                  CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttcca   >  1:965075/1‑92 (MQ=0)


                  CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttcca   >  1:288028/1‑92 (MQ=0)


                  CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttcca   >  2:910089/1‑92 (MQ=0)


                  CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttcca   >  1:1426925/1‑92 (MQ=0)


                   CACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttccag  >  2:2083432/1‑91 (MQ=0)


                   CACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttccag  >  1:979843/1‑91 (MQ=0)


                   CACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttccag  >  1:4791107/1‑91 (MQ=0)


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AGATGCGCCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1396073‑1396031


............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATGTCGCGGACG  <  NC_014034/1397465‑1397422

Base quality scores:


ATCG

< 3 ≤


ATCG

< 19 ≤


ATCG

< 27 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG