BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396064	159 (0.980)	44 (0.270)	5/132	21.2	0.20	intergenic (+876/‑55)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
*	?	NC_014034	1396771 =	199 (0.810)	44 (0.270)	5/132	21.2	0.20	coding (653/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


ACGCCTGCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA............................................................................  >  NC_014034/1396021‑1396064


..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGTGTGGATG  >  NC_014034/1396771‑1396812


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ggccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTG                     <  2:4742153/91‑1 (MQ=0)


 gccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG                    <  1:2991359/92‑1 (MQ=0)


  ccctcggcCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                   <  2:1474945/93‑1 (MQ=0)


  ccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                   <  1:62857/93‑1 (MQ=0)


  ccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                   <  1:1817183/93‑1 (MQ=0)


   cctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGAT                  >  1:4396343/8‑101 (MQ=0)


   cctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGAT                  >  1:3464217/8‑101 (MQ=0)


    ctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  1:1558154/95‑1 (MQ=1)


    ctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  2:1969226/95‑1 (MQ=1)


    ctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  1:1714703/95‑1 (MQ=1)


     tcgccCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG                <  1:2141665/96‑1 (MQ=1)


     tcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG                >  2:2841841/6‑101 (MQ=1)


      cgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGCTCGA               >  1:2880496/5‑101 (MQ=0)


      cgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGA               <  1:392385/97‑1 (MQ=1)


       gcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              <  1:3695411/98‑1 (MQ=1)


       gcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGATCGAA              >  1:4421915/4‑101 (MQ=1)


        caCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  2:1126459/99‑1 (MQ=1)


        caCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  2:3738254/99‑1 (MQ=1)


          CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAGCAATGCGGCGCGGGCCTATGGCTGCCGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt           <  1:1650046/101‑2 (MQ=0)


          CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt           <  2:3899138/101‑2 (MQ=1)


          CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt           <  2:3384717/101‑2 (MQ=1)


          CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCCCGGGGGCGTGGATCGAAAat           >  1:4809832/1‑99 (MQ=1)


           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGGTTGAAAatg          >  2:1754202/1‑98 (MQ=0)


           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtg          >  1:4009300/1‑99 (MQ=1)


           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtg          <  2:392077/101‑3 (MQ=1)


           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtg          >  2:4192343/1‑99 (MQ=1)


           GTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGCCCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtg          <  2:2700608/101‑3 (MQ=0)


           GTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtg          <  1:4639615/101‑3 (MQ=1)


            gccccCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGCCCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtgc         <  2:4448557/96‑4 (MQ=0)


            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtgc         >  1:55929/1‑98 (MQ=1)


            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtgc         <  1:5053765/101‑4 (MQ=1)


            TCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtgc         <  1:1522818/101‑4 (MQ=0)


             CGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtgcg        >  1:2610296/1‑97 (MQ=1)


              gccCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtgcgt       <  1:4462868/98‑6 (MQ=0)


                cCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGc     <  1:3062797/100‑2 (MQ=0)


                cCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGc     <  2:4506471/100‑2 (MQ=0)


                cCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGc     <  1:1271511/100‑2 (MQ=0)


                TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGc     >  1:549801/1‑100 (MQ=0)


                 CCCCCCGCGGGGGCTTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGcg    <  2:3510005/101‑3 (MQ=0)


                 CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGcg    <  2:1711472/101‑3 (MQ=0)


                 CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGcg    <  1:1300738/101‑3 (MQ=0)


                  CCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtgcgcgcgc   >  2:3498382/1‑92 (MQ=0)


                  CCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGcgc   >  1:2126314/1‑98 (MQ=0)


                   CCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGcgcg  <  2:2661674/101‑5 (MQ=0)


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ACGCCTGCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA............................................................................  >  NC_014034/1396021‑1396064


..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGTGTGGATG  >  NC_014034/1396771‑1396812

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 23 ≤


ATCG

< 32 ≤


ATCG

< 39 ≤


ATCG