New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396198185 (1.140)54 (0.330) 11/132 16.9 0.21 coding (80/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1397033 = 216 (0.880)coding (915/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

CGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.............................................................................  >  NC_014034/1396151‑1396198
..................................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTG  >  NC_014034/1397033‑1397075
                                                ||||||||||||||||||||||||||||||||||                                           
cttctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGANCACCGATACCGCGTCGCTCCCCCCGCGGGG                          >  1:1504003/11‑101 (MQ=0)
 ttctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGG                         <  2:4900408/92‑1 (MQ=0)
 ttctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGG                         >  1:4034998/10‑101 (MQ=0)
  tctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGC                        >  2:4739912/9‑101 (MQ=0)
   ctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCG                       >  1:4089478/8‑101 (MQ=0)
    tggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGT                      <  1:31130/95‑1 (MQ=0)
    tggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGT                      <  1:293838/95‑1 (MQ=0)
      gtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGG                    >  1:3463139/5‑101 (MQ=1)
      gtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGG                    <  1:2882074/97‑1 (MQ=1)
       tgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGA                   <  1:4013275/98‑1 (MQ=1)
        gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                  >  1:3481515/3‑101 (MQ=1)
        gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                  >  1:1698323/3‑101 (MQ=1)
        gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                  >  1:891788/3‑101 (MQ=1)
        gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGAAACCGCGTCGCTCCCCCCGCGGGGGGGCGGAT                  >  1:1896428/3‑101 (MQ=0)
         cCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  1:2234570/100‑1 (MQ=1)
         cCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  2:2527541/100‑1 (MQ=1)
         cCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  1:3172332/100‑1 (MQ=1)
         cCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  2:1007073/100‑1 (MQ=1)
          CGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                >  1:3940410/1‑101 (MQ=1)
           GCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGCTACCGCGTCGCTCCCCCCGCGGGGGCGGGGATCGA               >  2:2011300/1‑101 (MQ=0)
           GCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA               >  1:4118330/1‑101 (MQ=1)
           GCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA               >  1:2233440/1‑101 (MQ=1)
            CTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              <  2:2016318/101‑1 (MQ=1)
            CTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              <  1:2523865/101‑1 (MQ=1)
            CTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              >  2:4694280/1‑101 (MQ=1)
            CTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              <  2:5020392/101‑1 (MQ=1)
             cGCGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  1:2752067/100‑1 (MQ=0)
             TGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  1:3873980/101‑1 (MQ=1)
             TGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  1:4694603/101‑1 (MQ=1)
              GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            >  2:2608704/1‑101 (MQ=1)
              GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            <  2:2927946/101‑1 (MQ=1)
              GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            <  1:1111566/101‑1 (MQ=1)
               CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa           <  2:3097697/101‑2 (MQ=1)
               CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa           >  1:4108821/1‑100 (MQ=1)
               CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa           >  1:4298074/1‑100 (MQ=1)
                GTCGCTCCCCCCGGGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACat          >  1:2483848/1‑99 (MQ=0)
                GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAaat          >  2:1928821/1‑98 (MQ=1)
                GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat          >  1:2201262/1‑99 (MQ=1)
                GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat          >  1:26221/1‑99 (MQ=1)
                 TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatc         >  1:1524598/1‑98 (MQ=1)
                 TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatc         <  1:2101766/101‑4 (MQ=1)
                 TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatc         <  1:3137738/101‑4 (MQ=1)
                 TCGCCCCCCCCGCGGGGGCGTGGACCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatc         <  2:2349862/101‑4 (MQ=0)
                  CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcg        <  2:1633058/101‑5 (MQ=1)
                   GCTCGCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcga       >  1:4887783/1‑96 (MQ=1)
                   GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcga       <  1:4308045/101‑6 (MQ=2)
                   GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACatcga       >  2:4504788/1‑96 (MQ=1)
                     TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatg     >  2:2479082/1‑94 (MQ=1)
                     TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatg     <  2:1904474/101‑8 (MQ=1)
                     TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatg     <  2:417589/101‑8 (MQ=1)
                      CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatga    >  2:1611318/1‑93 (MQ=1)
                      CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatga    >  1:4566272/1‑93 (MQ=1)
                       CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatgat   <  2:4330042/101‑10 (MQ=0)
                        CCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatgatc  >  2:4341196/1‑91 (MQ=0)
                                                ||||||||||||||||||||||||||||||||||                                           
CGCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.............................................................................  >  NC_014034/1396151‑1396198
..................................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTG  >  NC_014034/1397033‑1397075

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG