New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396201	199 (1.160)	40 (0.230)	11/140	17.6	0.18	coding (83/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397631 =	162 (0.660)					coding (1513/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCG...........................................................................  >  NC_014034/1396155‑1396201 .............................................................................CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCC  >  NC_014034/1397631‑1397675                                                ||||||||||||||||||||||||||||||                                              ttttccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGT                       >  2:44280/11‑101 (MQ=255)    tccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGA                    >  2:4464216/8‑101 (MQ=255)     ccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  2:4990965/95‑1 (MQ=255)     ccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  2:5021173/7‑101 (MQ=255)     ccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  1:3027557/7‑101 (MQ=255)     ccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  1:3414911/7‑101 (MQ=255)      cagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATC                  >  2:178872/6‑101 (MQ=255)      cagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATC                  >  1:4105994/6‑101 (MQ=255)        gcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  1:3408350/98‑1 (MQ=255)        gcgGCGTCGCCCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  2:1714633/98‑1 (MQ=255)         cgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               <  1:5018366/99‑1 (MQ=255)         cgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               >  2:2606868/3‑101 (MQ=38)         cgGCGTCGCCCCCCCCGGGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               <  1:4759158/99‑1 (MQ=255)          gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACCGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGCGGGTCGAAA              >  1:2183431/2‑101 (MQ=255)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaa           >  2:1715252/1‑99 (MQ=25)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaa           >  1:1582774/1‑99 (MQ=25)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGCTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaa           >  1:4340462/1‑99 (MQ=25)              cCGCCCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAC          <  1:1961394/100‑1 (MQ=255)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACatct         >  2:3290159/1‑97 (MQ=255)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         >  2:3674373/1‑100 (MQ=25)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         >  1:2244894/1‑100 (MQ=25)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         >  2:2111456/1‑100 (MQ=25)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         >  2:4904896/1‑100 (MQ=25)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         >  1:579138/1‑100 (MQ=25)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         >  2:790992/1‑100 (MQ=25)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACAACt         >  1:3448571/1‑100 (MQ=255)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGCCGTGGATCGAAACAACt         >  2:3079121/1‑100 (MQ=255)                GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  1:3676763/1‑99 (MQ=25)                GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  1:2072209/1‑99 (MQ=25)                GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  2:1768225/1‑99 (MQ=25)                GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  2:3579539/1‑99 (MQ=25)                 ccCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGA       <  2:202813/99‑1 (MQ=255)                  TCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAc      >  2:392320/1‑100 (MQ=255)                   CCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcc     <  1:904876/101‑3 (MQ=255)                   CCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcc     >  2:2469357/1‑99 (MQ=255)                   CCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcc     >  2:1475214/1‑99 (MQ=255)                   CCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCACCGCGGGGGCGTGGATCGAAACaaatgacc     >  2:2903716/1‑93 (MQ=255)                    CCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAccc    >  2:2063067/1‑98 (MQ=255)                    CCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAccc    >  2:2001312/1‑98 (MQ=255)                      CCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcccgg  >  2:677089/1‑96 (MQ=255)                                                ||||||||||||||||||||||||||||||                                              CCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCG...........................................................................  >  NC_014034/1396155‑1396201 .............................................................................CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCC  >  NC_014034/1397631‑1397675 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG