New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396364 =	168 (0.980)	47 (0.270)	16/140	14.9	0.20	coding (246/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397265	202 (0.820)					coding (1147/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GGGCGCGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGCGTT..........................................................................  <  NC_014034/1396408‑1396364 ...........................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCGGATCTG  <  NC_014034/1397265‑1397222                                              ||||||||||||||||||||||||||||||                                             cgccagcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGG                    <  1:2318328/94‑1 (MQ=255) cgccagcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGG                    <  2:3169618/94‑1 (MQ=255) cgccagcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGG                    <  2:4520834/94‑1 (MQ=255)  gccagcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGA                   <  2:2058353/95‑1 (MQ=255)  gccagcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGA                   <  1:2221747/95‑1 (MQ=255)   ccagcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAG                  <  2:1398500/96‑1 (MQ=255)    cagcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:819455/97‑1 (MQ=255)    cagcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:2073663/5‑101 (MQ=255)    cagcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:3970563/97‑1 (MQ=255)     agcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  1:1860539/4‑101 (MQ=255)     agcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  1:1584245/4‑101 (MQ=255)      gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               >  2:2465733/3‑101 (MQ=255)      gcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               <  1:2130380/99‑1 (MQ=255)       cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              >  1:2386704/2‑101 (MQ=255)       cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              <  1:1775498/100‑1 (MQ=255)       cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              <  2:1590187/100‑1 (MQ=255)       cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCAGCGGGGGGGGCGAC              >  2:3380766/2‑101 (MQ=255)        GTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             >  2:4804377/1‑101 (MQ=255)         TTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGc            >  2:2034399/1‑100 (MQ=255)          tgCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc           <  2:851037/99‑3 (MQ=255)          TTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc           >  2:446528/1‑99 (MQ=255)          TTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc           >  2:985821/1‑99 (MQ=255)           TCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCG          <  1:978171/101‑1 (MQ=255)           TCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCG          >  2:347885/1‑101 (MQ=255)            CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGC         <  2:155585/101‑1 (MQ=255)            CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGC         <  2:939820/101‑1 (MQ=255)            CGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGC         <  2:2421776/101‑1 (MQ=255)             GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCa        >  1:3905826/1‑100 (MQ=255)             GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCa        >  2:1830109/1‑100 (MQ=255)             GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCa        <  1:668396/101‑2 (MQ=255)             GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCa        >  1:4101082/1‑100 (MQ=255)             GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCa        >  2:2242684/1‑100 (MQ=255)             GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCa        >  2:4942799/1‑100 (MQ=255)             GATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGACCGACGCCGCa        <  1:4368024/101‑2 (MQ=255)              ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCag       >  1:3822401/1‑99 (MQ=255)              ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCag       >  1:4047334/1‑99 (MQ=255)              ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCag       <  2:2159556/101‑3 (MQ=255)              ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCag       <  1:2394888/101‑3 (MQ=255)              ATCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCag       >  2:1590860/1‑99 (MQ=255)               TCCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGA      <  2:2689297/101‑1 (MQ=255)                CCACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGAT     <  1:2347694/101‑1 (MQ=255)                 CACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATC    <  2:1661204/101‑1 (MQ=255)                  ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCc   <  1:250414/101‑2 (MQ=255)                  ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCc   >  1:4764698/1‑100 (MQ=255)                  ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCc   <  1:761785/101‑2 (MQ=255)                  ACGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCc   >  1:979726/1‑100 (MQ=255)                   CGCCCCCGCGGGGGGAGCGACAGTGTTGACCACATATTTGTTGGCGGTGTCAGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCca  <  2:2444152/101‑3 (MQ=255)                                              ||||||||||||||||||||||||||||||                                             GGGCGCGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGCGTT..........................................................................  <  NC_014034/1396408‑1396364 ...........................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCGGATCTG  <  NC_014034/1397265‑1397222 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG