New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396370 =	157 (0.960)	52 (0.320)	5/134	21.4	0.21	coding (252/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397533	242 (0.990)					coding (1415/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CCCGCAGGGCGCGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...............................................................................  <  NC_014034/1396414‑1396370 ..............................................................................TTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGTGGTGCAGG  <  NC_014034/1397533‑1397488                                              |||||||||||||||||||||||||||||||||                                               gggacgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCG                         >  1:1554231/9‑101 (MQ=0) gggacgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCG                         >  2:3933493/9‑101 (MQ=0) gggacgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCG                         >  1:4228479/9‑101 (MQ=0)  ggacgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGG                        >  2:2375870/8‑101 (MQ=0)  ggacgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGG                        <  1:1111164/94‑1 (MQ=0)  ggacgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGG                        >  2:2666269/8‑101 (MQ=0)  ggacgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGG                        >  1:4175887/8‑101 (MQ=0)   gacgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGG                       >  2:3830578/7‑101 (MQ=0)   gacgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGG                       >  1:432345/7‑101 (MQ=0)    acgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGG                      <  1:2193081/96‑1 (MQ=0)     cgccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGG                     <  2:3079507/97‑1 (MQ=0)      gccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGG                    >  2:974032/4‑101 (MQ=1)      gccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGG                    <  2:4398618/98‑1 (MQ=1)      gccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGG                    <  2:3670788/98‑1 (MQ=1)      gccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGG                    <  1:780972/98‑1 (MQ=1)       ccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGA                   >  2:4644622/3‑101 (MQ=1)       ccGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGA                   <  1:2280190/99‑1 (MQ=1)        cggggGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAG                  <  2:908102/96‑1 (MQ=1)        cGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAG                  <  1:640531/100‑1 (MQ=1)         GCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  1:3928218/1‑101 (MQ=1)           ggGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               <  1:2185868/99‑1 (MQ=1)           ggGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               >  1:4543318/3‑101 (MQ=1)           ggGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               >  1:4517310/3‑101 (MQ=1)           ggGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               >  1:2411224/3‑101 (MQ=1)            gGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              >  2:3134417/2‑101 (MQ=1)             GGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC             <  1:4112736/101‑1 (MQ=1)             GGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC             >  1:3701546/1‑101 (MQ=1)              GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG            >  2:3173527/1‑101 (MQ=1)               TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCcc           >  1:642809/1‑99 (MQ=1)               TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGc           >  1:3846625/1‑100 (MQ=1)               TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGc           <  1:1266709/101‑2 (MQ=1)                TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGca          >  2:4062006/1‑99 (MQ=1)                TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGca          <  2:1840076/101‑3 (MQ=1)                TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGca          >  2:2101507/1‑99 (MQ=1)                 TCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACCGcag         >  1:1754332/1‑98 (MQ=1)                 TCGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcag         >  2:2718213/1‑98 (MQ=1)                  CGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGccgc        >  2:3585850/1‑97 (MQ=1)                  CGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagc        >  2:1961055/1‑97 (MQ=1)                  CGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagc        >  1:3621198/1‑97 (MQ=1)                  CGATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagc        <  1:1007183/101‑5 (MQ=1)                   GATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagcc       <  2:3739807/101‑6 (MQ=1)                    ATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACCGcagccg      >  2:206686/1‑95 (MQ=0)                    ATCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagccg      >  1:54187/1‑95 (MQ=1)                     TCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagccgc     >  2:1302225/1‑94 (MQ=0)                     TCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagccgc     >  1:477855/1‑94 (MQ=0)                     TCCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGGTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagccgc     >  2:1661797/1‑94 (MQ=0)                      CCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACCGcagccgct    >  1:3526510/1‑93 (MQ=0)                      CCACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagccgct    >  1:82140/1‑93 (MQ=0)                       CACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagccgctg   <  2:2234415/101‑10 (MQ=0)                       CACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagccgctg   >  2:189690/1‑92 (MQ=0)                       CACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagccgctg   <  1:2928173/101‑10 (MQ=0)                        ACGCCCCCGCGGGGGGAGCGACGCCGGGCCGGTTGCCGCGTTTGTCGGCGGCTTTTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGcagccgctgc  >  2:2261171/1‑91 (MQ=0)                                              |||||||||||||||||||||||||||||||||                                               CCCGCAGGGCGCGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...............................................................................  <  NC_014034/1396414‑1396370 ..............................................................................TTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGTGGTGCAGG  <  NC_014034/1397533‑1397488 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG