BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396401	151 (0.910)	35 (0.210)	4/136	22.5	0.17	coding (283/1578 nt)	RCAP_rcc01307	hypothetical protein
*	?	NC_014034	1397098 =	183 (0.750)	35 (0.210)	4/136	22.5	0.17	coding (980/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


AGACAAACGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC............................................................................  >  NC_014034/1396359‑1396401


...........................................................................TCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCCAGCTCG  >  NC_014034/1397098‑1397141


                                           ||||||||||||||||||||||||||||||||


tggaacaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGG                    <  1:1426925/91‑1 (MQ=0)


tggaacaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGG                    <  2:910089/91‑1 (MQ=0)


tggaacaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGG                    <  1:965075/91‑1 (MQ=0)


tggaacaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGG                    <  1:288028/91‑1 (MQ=0)


  gaacaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGAT                  <  2:917367/93‑1 (MQ=0)


  gaacaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGAT                  <  1:4626638/93‑1 (MQ=0)


  gaacaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGAT                  <  1:310441/93‑1 (MQ=0)


  gaacaggaTGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGAT                  <  1:3427133/93‑1 (MQ=0)


   aacaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  1:3547305/94‑1 (MQ=0)


    acaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                <  1:2597771/95‑1 (MQ=1)


    acaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                <  2:4201886/95‑1 (MQ=1)


    acaggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                <  1:648705/95‑1 (MQ=1)


     caggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA               <  2:559334/96‑1 (MQ=1)


      aggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              <  1:4619179/97‑1 (MQ=1)


       ggaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAA             >  2:328716/4‑101 (MQ=1)


       ggaTGTCGCTCCCCCCGCGAGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  1:2841709/98‑1 (MQ=0)


        gaTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCCCGGGGGCGTGGATCGAAAC            >  1:4187055/3‑101 (MQ=1)


         aTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACG           <  2:3997987/100‑1 (MQ=1)


         aTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGGGGGTCGAAACG           >  1:2967903/2‑101 (MQ=0)


          TGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGg          <  1:631125/101‑2 (MQ=1)


           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCCCGGGGGCGGGGGTCGAAACGgg         >  1:1830242/1‑99 (MQ=0)


            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACGggg        >  1:2073811/1‑98 (MQ=0)


             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtc       <  2:2562468/101‑5 (MQ=1)


             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtc       <  1:2544229/101‑5 (MQ=1)


             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCCCGGGGGCGTGGATCGAAACGgggg       >  2:2184247/1‑97 (MQ=0)


              GCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtcg      <  2:1481213/101‑6 (MQ=1)


              GCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtcg      <  1:4200446/101‑6 (MQ=1)


              GCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtcg      <  2:4884037/101‑6 (MQ=1)


              GCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGgggcg      >  1:1579828/1‑96 (MQ=1)


                cCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtcgaa    <  1:2141492/100‑8 (MQ=0)


                cCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtcgaa    <  2:4572235/100‑8 (MQ=0)


                 CCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtcgaag   <  1:4959908/101‑9 (MQ=0)


                 CCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtcgaag   <  2:4315229/101‑9 (MQ=0)


                 CCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtcgaag   <  2:559775/101‑9 (MQ=0)


                  CCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGggtcgaaga  <  1:1663391/101‑10 (MQ=0)


                                           ||||||||||||||||||||||||||||||||


AGACAAACGCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC............................................................................  >  NC_014034/1396359‑1396401


...........................................................................TCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCCAGCTCG  >  NC_014034/1397098‑1397141

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 27 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG