New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1396433 =140 (0.830)102 (0.600) 7/138 20.2 0.45 coding (315/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1397797 108 (0.440)intergenic (+101/+1797) RCAP_rcc01307/RCAP_rcc01309 hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

Only 100 of 200 total aligned reads displayed.

ATCCACGCCCCCGCGGGGGGAGCGACGTGCTCGCCGCCGCGTTTCCCGCGGAATTTCAGGTCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCCG...................................................................................................................................  <  NC_014034/1396532‑1396433
...................................................................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCGCCCGCGGGGGGAGCGACCT  <  NC_014034/1397797‑1397698
                                                                                                    |||||||||||||||||||||||||||||||                                                                                                    
ATCCACGCCCCCGCGGGGGGAGCGACGTGCTCGCCGCCGCGTTTCCCGCGGAATTTCAGGTCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCCGG                                                                                                                                    >  2:3235446/1‑101 (MQ=35)
                                                       cgccgggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGG                                                                             <  2:3771739/93‑1 (MQ=11)
                                                        gccgggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  2:1887599/94‑1 (MQ=11)
                                                         ccgggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  2:3894399/7‑100 (MQ=11)
                                                           gggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         >  1:3638760/5‑101 (MQ=11)
                                                            ggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                        >  1:1849072/4‑101 (MQ=11)
                                                            ggtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                        <  2:490366/98‑1 (MQ=11)
                                                             gtGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                       >  1:2535894/3‑101 (MQ=1)
                                                              tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                      >  1:14932/2‑101 (MQ=1)
                                                              tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                      <  1:1683291/100‑1 (MQ=1)
                                                               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT                                                                     >  2:4756481/1‑101 (MQ=1)
                                                                atctGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTG                                                                    <  2:4611981/97‑1 (MQ=1)
                                                                 tgCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGA                                                                   <  2:2672616/99‑1 (MQ=1)
                                                                 TTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGA                                                                   >  1:1231639/1‑101 (MQ=1)
                                                                  TCGATCCGCGCCCCCGCGGGGGGAGCGACCACCGGCCGTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAA                                                                  <  1:4263048/101‑1 (MQ=0)
                                                                  TCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAA                                                                  >  2:1436274/1‑101 (MQ=1)
                                                                  TCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAA                                                                  >  1:2681320/1‑101 (MQ=1)
                                                                   CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 >  1:60664/1‑101 (MQ=1)
                                                                   CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 <  1:212518/101‑1 (MQ=1)
                                                                   CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGCCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 <  1:2002408/101‑1 (MQ=1)
                                                                    GATCCACGCCCCCGCGGGGGGAGCGACCCCCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATC                                                                <  2:506593/101‑1 (MQ=1)
                                                                    GATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAgat                                                                >  1:4612303/1‑98 (MQ=1)
                                                                     ATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCT                                                               <  2:1988707/101‑1 (MQ=1)
                                                                      TCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTg                                                              >  2:815732/1‑100 (MQ=1)
                                                                       CCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTG                                                             >  1:4882990/1‑101 (MQ=1)
                                                                           GCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGT                                                         >  2:1535133/1‑101 (MQ=1)
                                                                             CCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGC                                                       >  1:3540317/1‑101 (MQ=1)
                                                                             CCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGC                                                       <  2:4502618/101‑1 (MQ=1)
                                                                              CCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGGGCT                                                      >  1:4527717/1‑101 (MQ=1)
                                                                               CCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTG                                                     <  1:1090900/101‑1 (MQ=1)
                                                                                  CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  <  2:3837298/101‑1 (MQ=1)
                                                                                  CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  <  2:4660266/101‑1 (MQ=1)
                                                                                  CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  <  1:4807265/101‑1 (MQ=1)
                                                                                  CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  >  2:588253/1‑101 (MQ=1)
                                                                                   GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGTGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 >  1:4331422/1‑101 (MQ=1)
                                                                                   GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 >  1:4770288/1‑101 (MQ=1)
                                                                                   GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 <  1:1028064/101‑1 (MQ=1)
                                                                                    GGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAG                                                >  1:408654/1‑101 (MQ=1)
                                                                                      GGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCG                                              >  2:3564800/1‑101 (MQ=1)
                                                                                        GAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCG                                            >  1:291733/1‑101 (MQ=1)
                                                                                             ACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGA                                       >  1:3116972/1‑101 (MQ=1)
                                                                                             ACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGA                                       <  1:93320/101‑1 (MQ=1)
                                                                                             ACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGA                                       <  1:515857/101‑1 (MQ=1)
                                                                                               caCCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACA                                     <  1:3381029/99‑1 (MQ=1)
                                                                                               caCCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACA                                     >  1:287585/3‑101 (MQ=1)
                                                                                                 CCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAG                                   >  2:1168890/1‑101 (MQ=1)
                                                                                                 CCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAG                                   >  1:323055/1‑101 (MQ=1)
                                                                                                  CGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGT                                  >  2:3199652/1‑101 (MQ=1)
                                                                                                  CGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGT                                  >  2:5000315/1‑101 (MQ=1)
                                                                                                  CGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGT                                  >  1:3480784/1‑101 (MQ=1)
                                                                                                  CGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGT                                  >  2:10747/1‑101 (MQ=1)
                                                                                                   GGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTT                                 <  2:4200129/101‑1 (MQ=1)
                                                                                                   GGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTT                                 >  2:1570452/1‑101 (MQ=1)
                                                                                                   GGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTT                                 >  2:2128611/1‑101 (MQ=1)
                                                                                                    GCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTT                                <  1:2102496/101‑1 (MQ=1)
                                                                                                    GCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTT                                <  2:1004346/101‑1 (MQ=1)
                                                                                                     CCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTC                               <  2:3577130/101‑1 (MQ=1)
                                                                                                     CCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTC                               >  2:3430715/1‑101 (MQ=1)
                                                                                                     CCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTC                               <  1:2830087/101‑1 (MQ=1)
                                                                                                      tcttccgatcTCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              <  2:3804878/91‑1 (MQ=0)
                                                                                                      CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              >  2:3788520/1‑101 (MQ=1)
                                                                                                       TTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGA                             >  2:3628624/1‑101 (MQ=1)
                                                                                                       TTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGA                             >  1:3664348/1‑101 (MQ=1)
                                                                                                        TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            <  1:5000645/101‑1 (MQ=1)
                                                                                                         ACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATC                           <  1:2407329/101‑1 (MQ=1)
                                                                                                         ACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATC                           >  2:878760/1‑101 (MQ=1)
                                                                                                         ACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATC                           >  1:4183446/1‑101 (MQ=1)
                                                                                                          CCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCC                          <  2:315642/101‑1 (MQ=1)
                                                                                                           CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCA                         <  1:2145858/101‑1 (MQ=1)
                                                                                                           CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCA                         <  1:4752868/101‑1 (MQ=1)
                                                                                                           CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCA                         <  2:3267618/101‑1 (MQ=1)
                                                                                                            CAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCAC                        <  2:2931147/101‑1 (MQ=1)
                                                                                                            CAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCAC                        >  2:4950815/1‑101 (MQ=1)
                                                                                                            CAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCAC                        >  2:1340506/1‑101 (MQ=1)
                                                                                                             AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       <  1:1546201/101‑1 (MQ=1)
                                                                                                             AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       >  1:4803973/1‑101 (MQ=1)
                                                                                                             AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       <  2:3969325/101‑1 (MQ=1)
                                                                                                              GATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGC                      >  1:3090706/1‑101 (MQ=1)
                                                                                                              GATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGC                      <  2:287532/101‑1 (MQ=1)
                                                                                                               ATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCc                     <  1:4572556/101‑2 (MQ=1)
                                                                                                               ATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCc                     >  2:517894/1‑100 (MQ=1)
                                                                                                               ATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCc                     >  1:1398617/1‑100 (MQ=1)
                                                                                                                 CGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAgatcggaaga                   >  1:3805163/1‑91 (MQ=0)
                                                                                                                 CGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCC                   >  2:2159601/1‑101 (MQ=1)
                                                                                                                  GGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCC                  <  2:4527397/101‑1 (MQ=1)
                                                                                                                  GGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCC                  <  2:3614012/101‑1 (MQ=1)
                                                                                                                    CGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGC                >  2:3378190/1‑101 (MQ=1)
                                                                                                                      ATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGG              >  1:3196547/1‑101 (MQ=1)
                                                                                                                         TCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGG           >  2:4854956/1‑101 (MQ=1)
                                                                                                                          CCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGG          >  2:4400239/1‑101 (MQ=1)
                                                                                                                          CCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGG          >  1:4828995/1‑101 (MQ=1)
                                                                                                                            TTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG        >  2:77826/1‑101 (MQ=1)
                                                                                                                             TGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGCCGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGC       <  2:1848939/101‑1 (MQ=0)
                                                                                                                             TGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGC       >  1:1729298/1‑101 (MQ=1)
                                                                                                                             TGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGC       <  2:1649615/101‑1 (MQ=1)
                                                                                                                              GCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCG      <  2:4331105/101‑1 (MQ=1)
                                                                                                                                 GAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCTATCCACGCCCCCGCGGGGGGAGCGACC   <  2:4939468/101‑1 (MQ=0)
                                                                                                                                 GAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC   >  2:2573392/1‑101 (MQ=1)
                                                                                                                                  AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCT  >  1:2499663/1‑101 (MQ=1)
                                                                                                                                  AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCT  <  1:878862/101‑1 (MQ=1)
                                                                                                    |||||||||||||||||||||||||||||||                                                                                                    
ATCCACGCCCCCGCGGGGGGAGCGACGTGCTCGCCGCCGCGTTTCCCGCGGAATTTCAGGTCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCCG...................................................................................................................................  <  NC_014034/1396532‑1396433
...................................................................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCGCCCGCGGGGGGAGCGACCT  <  NC_014034/1397797‑1397698

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG