New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396469	162 (0.990)	60 (0.370)	16/134	14.3	0.28	coding (351/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397632 =	150 (0.610)					coding (1514/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GGCACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1396426‑1396469 .............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCCGGT  >  NC_014034/1397632‑1397678                                             |||||||||||||||||||||||||||||||||                                                ccattggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTG                         <  2:4481981/91‑1 (MQ=0) ccattggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTG                         <  1:2638060/91‑1 (MQ=0)  cattggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                        <  2:3414647/92‑1 (MQ=0)  cattggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                        <  1:4900174/92‑1 (MQ=0)  cattggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                        >  1:2983440/10‑101 (MQ=0)  cattggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                        >  1:2176506/10‑101 (MQ=0)   attggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                       <  2:743935/93‑1 (MQ=0)   attggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                       >  1:15020/9‑101 (MQ=0)   attggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                       >  2:3242318/9‑101 (MQ=0)   attggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                       <  2:1157589/93‑1 (MQ=0)    ttggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGAT                      >  1:4088813/8‑101 (MQ=0)     tggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     >  2:992222/7‑101 (MQ=0)     tggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:629030/95‑1 (MQ=0)     tggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:3217404/95‑1 (MQ=0)     tggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:1256487/95‑1 (MQ=0)     tggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     >  1:1501469/7‑101 (MQ=0)     tggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     >  1:1945509/7‑101 (MQ=0)     tggcccCGGGCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:29207/95‑1 (MQ=0)      ngcncnnGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  1:2165525/94‑1 (MQ=0)      ggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    >  1:2031600/6‑101 (MQ=1)      ggcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  2:3027319/96‑1 (MQ=1)       gcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   >  2:3991955/5‑101 (MQ=1)       gcccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   >  2:3462617/5‑101 (MQ=1)        cccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:4591282/98‑1 (MQ=1)         ccCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                 <  1:903933/99‑1 (MQ=1)          cCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                <  2:665092/100‑1 (MQ=1)           CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT               <  2:4723137/101‑1 (MQ=1)           CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT               >  2:3058242/1‑101 (MQ=1)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA              >  1:4124903/1‑101 (MQ=1)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA              <  1:2001456/101‑1 (MQ=1)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA              <  1:2707310/101‑1 (MQ=1)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA              >  2:4049441/1‑101 (MQ=1)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAC             >  1:3824646/1‑101 (MQ=1)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAC             >  1:1700554/1‑101 (MQ=1)             GTCCCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAC             <  1:3648862/101‑1 (MQ=1)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACA            <  1:1936375/101‑1 (MQ=1)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCACCGCGGGGGCGTGGATCGAAACTACA            >  1:4238981/1‑101 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGTGCGTGGATCGAAACTAaac           >  2:4009691/1‑98 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          >  1:3393917/1‑99 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          >  2:4741744/1‑99 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          <  1:2155961/101‑3 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          <  2:1447142/101‑3 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          <  1:44290/101‑3 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGACTATGCGCTGGACGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCACAcc          >  1:1638978/1‑99 (MQ=0)                  TCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgg        >  1:3457895/1‑97 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgg        >  1:322135/1‑97 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGGCGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       >  1:4245610/1‑96 (MQ=0)                   CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAAATACAccggg       >  2:1955271/1‑96 (MQ=0)                   CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       >  2:3062559/1‑96 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       >  2:2969986/1‑96 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       <  2:4469526/101‑6 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       >  1:1484403/1‑96 (MQ=1)                     CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggc     <  2:3127467/101‑8 (MQ=0)                     CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggac     >  2:5026937/1‑94 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggct    <  2:2088486/101‑9 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGcggggct    >  2:1377810/1‑94 (MQ=0)                       CCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggggtc   >  1:1126573/1‑92 (MQ=0)                        CGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggctct  >  2:422088/1‑91 (MQ=0)                        CGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggctct  <  2:58839/101‑11 (MQ=0)                        CGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggctct  >  1:2008226/1‑91 (MQ=0)                                             |||||||||||||||||||||||||||||||||                                                GGCACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1396426‑1396469 .............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCCGGT  >  NC_014034/1397632‑1397678 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG