BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396573 =	162 (1.000)	40 (0.250)	10/132	17.5	0.20	coding (455/1578 nt)	RCAP_rcc01307	hypothetical protein
*	?	NC_014034	= 1397867	161 (0.660)	40 (0.250)	10/132	17.5	0.20	intergenic (+171/+1727)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.


CGACGAAATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..............................................................................  <  NC_014034/1396614‑1396573


............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATGGCGATGCGA  <  NC_014034/1397867‑1397824


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tcttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGG                     >  1:1663391/10‑101 (MQ=0)


 cttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                    >  1:4959908/9‑101 (MQ=0)


 cttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                    >  2:559775/9‑101 (MQ=0)


 cttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                    >  2:4315229/9‑101 (MQ=0)


  ttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGg                   >  1:2141492/8‑100 (MQ=0)


  ttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGg                   >  2:4572235/8‑100 (MQ=0)


    cgcccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:1579828/96‑1 (MQ=1)


    cgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:4884037/6‑101 (MQ=1)


    cgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  1:4200446/6‑101 (MQ=1)


    cgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:1481213/6‑101 (MQ=1)


     gaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  1:2544229/5‑101 (MQ=1)


     gaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  2:2562468/5‑101 (MQ=1)


     ccccCGTTTCGATCCACGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                <  2:2184247/97‑1 (MQ=0)


      cccCGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               <  1:2073811/98‑1 (MQ=0)


       ccCGTTTCGACCCCCGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              <  1:1830242/99‑1 (MQ=0)


        cCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACA             >  1:631125/2‑101 (MQ=1)


         CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAT            >  2:3997987/1‑101 (MQ=1)


         CGTTTCGACCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAT            <  1:2967903/101‑1 (MQ=0)


          GTTTCGATCCACGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATc           <  1:4187055/101‑2 (MQ=1)


           TTTCGATCCACGCCCCCGCGGGGGGAGCGACAATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCTCGCGGGGGGAGCGACATcc          >  1:2841709/1‑99 (MQ=0)


           TTTCGACCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcc          <  2:328716/101‑3 (MQ=1)


            TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcct         >  1:4619179/1‑98 (MQ=1)


             TCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctg        >  2:559334/1‑97 (MQ=1)


              CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       >  1:648705/1‑96 (MQ=1)


              CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       >  2:4201886/1‑96 (MQ=1)


              CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       >  1:2597771/1‑96 (MQ=1)


              CGACCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       <  1:2152197/101‑6 (MQ=0)


              CGACCCACCCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgt       <  2:584446/101‑6 (MQ=0)


               GATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgtt      >  1:3547305/1‑95 (MQ=0)


                ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGGGCGACATcctgttc     >  1:3427133/1‑94 (MQ=0)


                ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttc     >  2:917367/1‑94 (MQ=0)


                ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttc     >  1:4626638/1‑94 (MQ=0)


                ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttc     >  1:310441/1‑94 (MQ=0)


                  CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttcca   >  1:965075/1‑92 (MQ=0)


                  CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttcca   >  1:288028/1‑92 (MQ=0)


                  CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttcca   >  2:910089/1‑92 (MQ=0)


                  CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttcca   >  1:1426925/1‑92 (MQ=0)


                   CACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttccag  >  2:2083432/1‑91 (MQ=0)


                   CACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttccag  >  1:979843/1‑91 (MQ=0)


                   CACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATcctgttccag  >  1:4791107/1‑91 (MQ=0)


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CGACGAAATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..............................................................................  <  NC_014034/1396614‑1396573


............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATGGCGATGCGA  <  NC_014034/1397867‑1397824

Base quality scores:


ATCG

< 3 ≤


ATCG

< 18 ≤


ATCG

< 27 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG