New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396573 =	158 (0.990)	63 (0.400)	3/130	22.9	0.44	coding (455/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1434777	NA (NA)					intergenic (‑556/‑402)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

CGACGAAATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1396614‑1396573 .............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCTGCCCGCGA  <  NC_014034/1434777‑1434733                                           |||||||||||||||||||||||||||||||||||                                              agccagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGG                       <  1:3863349/91‑1 (MQ=0) agccagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGG                       >  2:1590595/11‑101 (MQ=0) agccagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGG                       >  1:4903488/11‑101 (MQ=0)   ccagcataGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                     <  1:4546155/93‑1 (MQ=0)   ccagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                     <  1:879297/93‑1 (MQ=0)   ccagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                     >  2:4551078/9‑101 (MQ=0)   ccagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                     >  2:4805210/9‑101 (MQ=0)    cagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                    >  2:1410700/8‑100 (MQ=0)    cagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    <  1:4451178/94‑1 (MQ=1)    cagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    <  1:4601225/94‑1 (MQ=1)    cagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    <  1:4665167/94‑1 (MQ=1)    cagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    <  1:3270682/94‑1 (MQ=1)    cagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    >  1:2438192/8‑101 (MQ=1)    cagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    >  1:216669/8‑101 (MQ=1)    cagcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    <  1:1176760/94‑1 (MQ=1)     agcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                   >  2:4982795/7‑101 (MQ=1)      gcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                  <  1:910194/96‑1 (MQ=1)      gcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                  <  1:2141749/96‑1 (MQ=1)      gcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                  <  1:4978266/96‑1 (MQ=1)      gcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                  <  2:1663262/96‑1 (MQ=1)      gcataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                  <  2:2400946/96‑1 (MQ=1)       cataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                 <  2:2544048/97‑1 (MQ=1)        ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGc                >  2:1057343/4‑100 (MQ=1)        ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                <  2:310388/98‑1 (MQ=1)        ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                >  1:2016563/4‑101 (MQ=1)        ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                >  1:2871982/4‑101 (MQ=1)        ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGAGTTTCGATCCACGCCCCCGCGGGCGGAGCGA                >  2:4508980/4‑101 (MQ=0)         taGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC               >  1:4826273/3‑101 (MQ=1)         taGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCAGGGTGTTTCGATCCACGCCCCCGCGGGGGGGGCGAC               >  2:4434227/3‑101 (MQ=0)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC              <  1:4161174/100‑1 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC              >  1:223518/2‑101 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC              >  2:3598721/2‑101 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC              >  1:3451392/2‑101 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg              >  2:664653/2‑100 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA             >  2:1546071/1‑101 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA             >  1:3168975/1‑101 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA             >  1:3772024/1‑101 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA             >  2:2170493/1‑101 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA             >  2:2790760/1‑101 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGGTTCGATCCACGCCCCCGCTGGGGGTGCGACCAc            >  1:4361551/1‑100 (MQ=0)             TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcc           >  2:4470856/1‑99 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCCCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcc           <  2:1945034/101‑3 (MQ=1)              TCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccg          >  1:490431/1‑98 (MQ=1)              TCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccg          <  2:618979/101‑4 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccgg         >  1:4752711/1‑97 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccgg         >  1:3778561/1‑97 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccgg         <  1:4553690/101‑5 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccgg         >  1:4446630/1‑97 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccggc        >  1:2483963/1‑96 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccggc        >  1:4574011/1‑96 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccggc        >  1:1988851/1‑96 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGGGTTTCGATCCACGCCCCCGCGGGGGGAGAGACCAccggc        >  2:715311/1‑96 (MQ=0)                 acCCACGCCCCCGGGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCC       <  2:3911754/99‑1 (MQ=0)                 ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCC       <  1:4833911/101‑1 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCC       >  1:28874/1‑101 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCC       >  1:2028608/1‑101 (MQ=1)                  TCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCt      <  1:2083580/101‑2 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCtt     >  1:108621/1‑99 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCtta    >  2:212484/1‑98 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCtta    >  1:1606329/1‑98 (MQ=0)                     ACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCttac   >  1:3796329/1‑97 (MQ=0)                     ACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCttac   <  1:2607506/101‑5 (MQ=0)                      CGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCttacc  <  2:1426798/101‑6 (MQ=0)                                           |||||||||||||||||||||||||||||||||||                                              CGACGAAATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1396614‑1396573 .............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCTGCCCGCGA  <  NC_014034/1434777‑1434733 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG