New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396737	173 (1.070)	48 (0.300)	3/132	23.1	0.22	coding (619/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397233 =	168 (0.690)					coding (1115/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCGGCGATAACTCGCTCTTGCGATCCGTCATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1396642‑1396737 ..................................................................................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCGCGCACGCG  >  NC_014034/1397233‑1397277                                                                                                 ||||||||||||||||||||||||||||||||||                                              GCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCGGCGATAACTCGCTCTTGCGATCCGTCATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACtgt                                                                            >  2:2140260/1‑98 (MQ=1)                                                       gtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGG                      <  1:2882074/92‑1 (MQ=1)                                                       gtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGG                      >  1:3463139/10‑101 (MQ=1)                                                        tgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGA                     <  1:4013275/93‑1 (MQ=1)                                                         gccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                    >  1:891788/8‑101 (MQ=1)                                                         gccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                    >  1:1698323/8‑101 (MQ=1)                                                         gccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                    >  1:3481515/8‑101 (MQ=1)                                                          ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  2:1007073/95‑1 (MQ=1)                                                          ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:2234570/95‑1 (MQ=1)                                                          ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  2:2527541/95‑1 (MQ=1)                                                          ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:3172332/95‑1 (MQ=1)                                                           cgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  >  1:3940410/6‑101 (MQ=1)                                                            gctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGCTACCGCGTCGCTCCCCCCGCGGGGGCGGGGATCGA                 >  2:2011300/5‑101 (MQ=0)                                                            gctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  1:4118330/5‑101 (MQ=1)                                                            gctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  1:2233440/5‑101 (MQ=1)                                                             ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  2:2016318/98‑1 (MQ=1)                                                             ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  1:2523865/98‑1 (MQ=1)                                                             ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  2:4694280/4‑101 (MQ=1)                                                             ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  2:5020392/98‑1 (MQ=1)                                                              tgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  1:3873980/99‑1 (MQ=1)                                                              tgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  1:4694603/99‑1 (MQ=1)                                                              cgCGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  1:2752067/99‑1 (MQ=0)                                                               gCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  2:2608704/2‑101 (MQ=1)                                                               gCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  2:2927946/100‑1 (MQ=1)                                                               gCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  1:1111566/100‑1 (MQ=1)                                                                CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA             <  2:3097697/101‑1 (MQ=1)                                                                CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA             >  1:4108821/1‑101 (MQ=1)                                                                CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA             >  1:4298074/1‑101 (MQ=1)                                                                 GTCGCTCCCCCCGGGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACAt            >  1:2483848/1‑100 (MQ=0)                                                                 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAaat            >  2:1928821/1‑98 (MQ=1)                                                                 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt            >  1:2201262/1‑100 (MQ=1)                                                                 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt            >  1:26221/1‑100 (MQ=1)                                                                  TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc           >  1:1524598/1‑99 (MQ=1)                                                                  TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc           <  1:2101766/101‑3 (MQ=1)                                                                  TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc           <  1:3137738/101‑3 (MQ=1)                                                                  TCGCCCCCCCCGCGGGGGCGTGGACCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc           <  2:2349862/101‑3 (MQ=0)                                                                   CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCG          <  2:1633058/101‑1 (MQ=1)                                                                    GCTCGCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGa         >  1:4887783/1‑100 (MQ=1)                                                                    GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGa         <  1:4308045/101‑2 (MQ=2)                                                                    GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACATCGa         >  2:4504788/1‑100 (MQ=1)                                                                      TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatg       >  2:2479082/1‑98 (MQ=1)                                                                      TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatg       <  2:1904474/101‑4 (MQ=1)                                                                      TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatg       <  2:417589/101‑4 (MQ=1)                                                                       CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatga      >  2:1611318/1‑97 (MQ=1)                                                                       CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatga      >  1:4566272/1‑97 (MQ=1)                                                                        CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatgat     <  2:4330042/101‑6 (MQ=0)                                                                         CCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatgatc    >  2:4341196/1‑95 (MQ=0)                                                                           CCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatgatcaa  <  1:3079745/101‑9 (MQ=0)                                                                           CCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatgatcaa  <  2:4854481/101‑9 (MQ=0)                                                                                                 ||||||||||||||||||||||||||||||||||                                              GCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCGGCGATAACTCGCTCTTGCGATCCGTCATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1396642‑1396737 ..................................................................................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCGCGCACGCG  >  NC_014034/1397233‑1397277 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG