New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396802	247 (1.550)	47 (0.300)	6/130	20.1	0.19	coding (684/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397903 =	147 (0.600)					intergenic (+207/+1691)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

ATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1396761‑1396802 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTATGGGAGGC  >  NC_014034/1397903‑1397946                                           |||||||||||||||||||||||||||||||||||                                             ttgcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                      <  2:4026885/91‑1 (MQ=9) ttgcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                      <  1:2044398/91‑1 (MQ=9) ttgcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                      <  1:700807/91‑1 (MQ=9)   gcgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  1:98905/93‑1 (MQ=14)    cgcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  2:5018250/94‑1 (MQ=14)     gcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:3977772/95‑1 (MQ=14)     gcgctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:851139/95‑1 (MQ=14)     gcgctgGTCGCTCCACCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:4358757/95‑1 (MQ=14)        ctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  2:4923984/98‑1 (MQ=11)         tgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  2:2308317/3‑101 (MQ=1)         tgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAAC              >  1:1390546/3‑101 (MQ=1)         tgGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  2:1387470/99‑1 (MQ=1)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             >  2:744896/2‑100 (MQ=1)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             >  2:3711699/2‑100 (MQ=1)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             >  2:2289756/2‑100 (MQ=1)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             <  1:1258730/100‑2 (MQ=1)          gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             >  1:130646/2‑100 (MQ=1)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGCTCGCAACct            >  2:1077901/1‑99 (MQ=0)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACct            <  2:4361923/101‑3 (MQ=1)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGGCGCTCCCCCCGCGGGGGCGGGGATCGAAACct            >  2:4754906/1‑99 (MQ=0)            gCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAAATCCGCAATCGGCCGGGCTGGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACcta           <  1:4264405/100‑4 (MQ=0)             CGCTCCCCCCGCGGGGGTGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          <  2:4539446/101‑5 (MQ=0)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          <  1:4949381/101‑5 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          <  2:4289950/101‑5 (MQ=1)             CGCCCCCCCCGCGGGGGCGTGGATCGAAACTTGATGCCCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          <  2:2876833/101‑5 (MQ=0)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        >  2:3416623/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        <  1:155601/101‑1 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        >  1:3715007/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        >  1:378423/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        <  1:3994964/101‑1 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        >  1:4871950/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        <  2:5007659/101‑1 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATG        <  1:1057341/101‑1 (MQ=1)               CTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGa       <  1:4987852/101‑2 (MQ=0)                cCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      <  2:4937241/100‑3 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgtatgag       <  1:2066794/101‑8 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      >  2:3106645/1‑99 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      >  1:2439499/1‑99 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      <  1:3037247/101‑3 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagg     <  2:1394814/101‑4 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagg     >  1:4037226/1‑98 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAACCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagg     <  1:4244618/101‑4 (MQ=0)                  CCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGaggg    >  2:3725007/1‑97 (MQ=0)                  CCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGaggg    <  2:1326626/101‑5 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggct  <  2:1006471/101‑7 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggct  >  1:3996205/1‑95 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggct  <  1:4037446/101‑7 (MQ=0)                                           |||||||||||||||||||||||||||||||||||                                             ATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1396761‑1396802 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTATGGGAGGC  >  NC_014034/1397903‑1397946 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG