New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396867187 (1.140)58 (0.350) 10/134 17.7 0.26 coding (749/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1397632 = 150 (0.610)coding (1514/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

GGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1396825‑1396867
............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCCGGT  >  NC_014034/1397632‑1397678
                                           |||||||||||||||||||||||||||||||||                                               
cattggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                        <  2:3414647/91‑1 (MQ=0)
cattggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                        <  1:4900174/91‑1 (MQ=0)
cattggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                        >  1:2983440/11‑101 (MQ=0)
cattggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGG                        >  1:2176506/11‑101 (MQ=0)
 attggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                       <  2:743935/92‑1 (MQ=0)
 attggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                       >  2:3242318/10‑101 (MQ=0)
 attggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                       >  1:15020/10‑101 (MQ=0)
 attggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                       <  2:1157589/92‑1 (MQ=0)
  ttggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGAT                      >  1:4088813/9‑101 (MQ=0)
   tggccccgggCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:29207/91‑1 (MQ=0)
   tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     >  2:992222/8‑101 (MQ=0)
   tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:629030/94‑1 (MQ=0)
   tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:3217404/94‑1 (MQ=0)
   tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:1256487/94‑1 (MQ=0)
   tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     >  1:1501469/8‑101 (MQ=0)
   tggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                     >  1:1945509/8‑101 (MQ=0)
    ngcncnnGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  1:2165525/94‑1 (MQ=0)
    ggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    >  1:2031600/7‑101 (MQ=1)
    ggccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  2:3027319/95‑1 (MQ=1)
     gccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   >  2:3462617/6‑101 (MQ=1)
     gccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   >  2:3991955/6‑101 (MQ=1)
      ccccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:4591282/97‑1 (MQ=1)
       cccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                 <  1:903933/98‑1 (MQ=1)
        ccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                <  2:665092/99‑1 (MQ=1)
         cGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT               >  2:3058242/2‑101 (MQ=1)
         cGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT               <  2:4723137/100‑1 (MQ=1)
          GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA              <  1:2707310/101‑1 (MQ=1)
          GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA              >  1:4124903/1‑101 (MQ=1)
          GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA              <  1:2001456/101‑1 (MQ=1)
          GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTA              >  2:4049441/1‑101 (MQ=1)
           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAC             >  1:3824646/1‑101 (MQ=1)
           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAC             >  1:1700554/1‑101 (MQ=1)
           GTCCCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAC             <  1:3648862/101‑1 (MQ=1)
            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACA            <  1:1936375/101‑1 (MQ=1)
            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCACCGCGGGGGCGTGGATCGAAACTACA            >  1:4238981/1‑101 (MQ=1)
             CGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGTGCGTGGATCGAAACTAaac           >  2:4009691/1‑98 (MQ=0)
              GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          <  1:2155961/101‑3 (MQ=1)
              GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          >  2:4741744/1‑99 (MQ=1)
              GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          <  2:1447142/101‑3 (MQ=1)
              GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          <  1:44290/101‑3 (MQ=1)
              GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc          >  1:3393917/1‑99 (MQ=1)
              GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGACTATGCGCTGGACGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCACAcc          >  1:1638978/1‑99 (MQ=0)
                TCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgg        >  1:322135/1‑97 (MQ=1)
                TCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgg        >  1:3457895/1‑97 (MQ=1)
                 CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGGCGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       >  1:4245610/1‑96 (MQ=0)
                 CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAAATACAccggg       >  2:1955271/1‑96 (MQ=0)
                 CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       >  1:1484403/1‑96 (MQ=1)
                 CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       >  2:3062559/1‑96 (MQ=1)
                 CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       <  2:4469526/101‑6 (MQ=1)
                 CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg       >  2:2969986/1‑96 (MQ=1)
                   CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggc     <  2:3127467/101‑8 (MQ=0)
                   CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggac     >  2:5026937/1‑94 (MQ=0)
                    CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggct    <  2:2088486/101‑9 (MQ=0)
                    CCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGcggggct    >  2:1377810/1‑94 (MQ=0)
                     CCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggggtc   >  1:1126573/1‑92 (MQ=0)
                      CGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggctct  >  2:422088/1‑91 (MQ=0)
                      CGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggctct  <  2:58839/101‑11 (MQ=0)
                      CGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggctct  >  1:2008226/1‑91 (MQ=0)
                                           |||||||||||||||||||||||||||||||||                                               
GGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1396825‑1396867
............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCCGGT  >  NC_014034/1397632‑1397678

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG