New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1396903 =200 (1.280)96 (0.610) 43/128 4.8 0.38 coding (785/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1397797 108 (0.440)intergenic (+101/+1797) RCAP_rcc01307/RCAP_rcc01309 hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

Only 100 of 208 total aligned reads displayed.

CGGCCGCGCAGGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC........................................................................................................................................  <  NC_014034/1396948‑1396903
..................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCGCCCGCGGGGGGAGCGACCT  <  NC_014034/1397797‑1397698
                                              ||||||||||||||||||||||||||||||||||||                                                                                                    
ctgcgGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCG                                                                                   <  1:3756758/96‑1 (MQ=0)
ctgcgGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCG                                                                                   <  2:3426869/96‑1 (MQ=0)
ctgcgGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCG                                                                                   <  1:3825987/96‑1 (MQ=0)
 tgcgGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGC                                                                                  >  1:4934741/5‑101 (MQ=0)
   cgGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGG                                                                                <  1:4473046/99‑1 (MQ=0)
   cgGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGG                                                                                >  1:2221359/3‑101 (MQ=0)
      CGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGG                                                                             <  2:3771739/101‑1 (MQ=11)
       gccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  2:1542296/95‑1 (MQ=11)
       gccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  2:1887599/95‑1 (MQ=11)
        ccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  2:2086059/6‑100 (MQ=11)
        ccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  2:3894399/6‑100 (MQ=11)
         cgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                          <  2:2897307/97‑1 (MQ=11)
         cgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                          >  2:4893434/5‑101 (MQ=11)
          gggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         <  1:2790962/98‑1 (MQ=11)
          gggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         <  2:4984721/98‑1 (MQ=11)
             TGTCTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGGGCGAC                                                                      >  1:1896147/1‑101 (MQ=0)
              GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT                                                                     >  1:2866293/1‑101 (MQ=1)
              GTTTCGATCCACGCCCCCGCGGAGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT                                                                     >  2:515778/1‑101 (MQ=1)
               atctGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTG                                                                    <  2:4611981/97‑1 (MQ=1)
                tgCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGA                                                                   <  2:2672616/99‑1 (MQ=1)
                TTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGA                                                                   <  2:3575117/101‑1 (MQ=1)
                TTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGA                                                                   >  1:1231639/1‑101 (MQ=1)
                 TCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAA                                                                  >  2:4752545/1‑101 (MQ=1)
                  CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 >  1:60664/1‑101 (MQ=1)
                  CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 >  1:4809219/1‑101 (MQ=1)
                   GATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATC                                                                <  2:1027640/101‑1 (MQ=1)
                    ATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCT                                                               <  2:1988707/101‑1 (MQ=1)
                     TCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTT                                                              >  1:3662728/1‑101 (MQ=1)
                     TCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTT                                                              >  1:2524565/1‑101 (MQ=1)
                         CGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACG                                                          <  1:2113248/101‑1 (MQ=1)
                         CGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACG                                                          <  1:1410827/101‑1 (MQ=1)
                            CCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGC                                                       <  2:4502618/101‑1 (MQ=1)
                             CCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGGGCT                                                      >  1:4527717/1‑101 (MQ=1)
                              CCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTG                                                     <  1:1090900/101‑1 (MQ=1)
                               CGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGA                                                    <  2:570184/101‑1 (MQ=1)
                                 CGGGGGGAGCGACCACCTGCCTTACCCAGATCGGCGATGCCCTTGCCGAGTTTCAATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  <  2:2846884/101‑1 (MQ=0)
                                 CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  <  2:3837298/101‑1 (MQ=1)
                                 CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  >  1:4096649/1‑101 (MQ=1)
                                  GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 <  2:2141344/101‑1 (MQ=1)
                                  GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 >  2:875800/1‑101 (MQ=1)
                                  GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 >  1:168629/1‑101 (MQ=1)
                                  GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 <  1:1028064/101‑1 (MQ=1)
                                    GGGGAGCGACCCCCGGCCTTCCCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGC                                               <  1:3493609/101‑1 (MQ=0)
                                     GGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCAAGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCG                                              >  2:1712355/1‑101 (MQ=1)
                                       GAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCG                                            >  1:291733/1‑101 (MQ=1)
                                        agtGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGT                                           >  1:2891389/4‑101 (MQ=1)
                                         GCGACCACCGTCTTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTC                                          <  1:4014225/101‑1 (MQ=0)
                                           GACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAG                                        >  1:2585090/1‑101 (MQ=1)
                                           GACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAG                                        >  2:360919/1‑101 (MQ=1)
                                            ACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGA                                       <  1:515857/101‑1 (MQ=1)
                                            ACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGA                                       >  1:3116972/1‑101 (MQ=1)
                                            ACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGA                                       <  1:93320/101‑1 (MQ=1)
                                             cccCCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGAC                                      <  2:2935606/98‑1 (MQ=1)
                                             CCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGAC                                      <  1:3632524/101‑1 (MQ=1)
                                                CCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAG                                   >  1:323055/1‑101 (MQ=1)
                                                CCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAG                                   >  1:3447176/1‑101 (MQ=1)
                                                  cGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTT                                 <  1:212567/100‑1 (MQ=1)
                                                  GGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTT                                 <  2:4200129/101‑1 (MQ=1)
                                                   GCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTT                                >  2:1625030/1‑101 (MQ=1)
                                                     tcttccgatcTCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              <  2:3804878/91‑1 (MQ=0)
                                                     CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              <  1:1590992/101‑1 (MQ=1)
                                                     CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              >  2:3788520/1‑101 (MQ=1)
                                                     CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              >  1:4276446/1‑101 (MQ=1)
                                                     CTTACCCAGATCGGCGATGGCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              <  2:648616/101‑1 (MQ=1)
                                                      TTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGA                             >  2:3628624/1‑101 (MQ=1)
                                                      TTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGA                             >  1:1749437/1‑101 (MQ=1)
                                                       TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            <  1:5000645/101‑1 (MQ=1)
                                                       TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            >  1:2447360/1‑101 (MQ=1)
                                                       TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            >  2:1421715/1‑101 (MQ=1)
                                                          CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCA                         <  2:3267618/101‑1 (MQ=1)
                                                          CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCA                         <  2:3446911/101‑1 (MQ=1)
                                                          CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCA                         <  1:4189870/101‑1 (MQ=1)
                                                          CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCCATCCA                         <  2:5015550/101‑1 (MQ=1)
                                                           cgatctGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCAC                        <  2:4791839/95‑1 (MQ=0)
                                                           CAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCAC                        >  1:1533368/1‑101 (MQ=1)
                                                           CAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCAC                        <  1:2086207/101‑1 (MQ=1)
                                                            AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       >  2:1108464/1‑101 (MQ=1)
                                                            AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       <  2:3969325/101‑1 (MQ=1)
                                                             GATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGC                      >  1:3090706/1‑101 (MQ=1)
                                                             GATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGC                      >  1:1253354/1‑101 (MQ=1)
                                                             GATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGC                      >  2:4945115/1‑101 (MQ=1)
                                                              ATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCc                     <  2:3168724/101‑2 (MQ=1)
                                                              ATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCc                     <  1:4572556/101‑2 (MQ=1)
                                                                CGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCC                   <  1:4805536/101‑1 (MQ=1)
                                                                 GGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACagatcg                  >  1:4792162/1‑95 (MQ=0)
                                                                 GGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCC                  <  2:4527397/101‑1 (MQ=1)
                                                                 GGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCC                  <  2:3209707/101‑1 (MQ=1)
                                                                 GGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCC                  <  1:4872760/101‑1 (MQ=1)
                                                                   CGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGC                >  2:3378190/1‑101 (MQ=1)
                                                                     ATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGG              >  1:3196547/1‑101 (MQ=1)
                                                                     ATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGG              >  1:4629251/1‑101 (MQ=1)
                                                                      TGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGG             >  2:806040/1‑101 (MQ=1)
                                                                        TCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGG           >  2:4919650/1‑101 (MQ=1)
                                                                         CCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGG          >  2:4400239/1‑101 (MQ=1)
                                                                           TTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG        <  2:1305451/101‑1 (MQ=1)
                                                                             gcgGAGTTTCGATCCTCGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCG      <  1:4767455/98‑1 (MQ=0)
                                                                             GCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCc      >  2:1521168/1‑100 (MQ=1)
                                                                             GCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCG      <  2:4331105/101‑1 (MQ=1)
                                                                             GCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCG      >  2:2385563/1‑101 (MQ=1)
                                                                                 AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCT  <  1:878862/101‑1 (MQ=1)
                                              ||||||||||||||||||||||||||||||||||||                                                                                                    
CGGCCGCGCAGGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC........................................................................................................................................  <  NC_014034/1396948‑1396903
..................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCGCCCGCGGGGGGAGCGACCT  <  NC_014034/1397797‑1397698

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG