New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1397098 =	183 (1.100)	30 (0.180)	4/136	22.5	0.15	coding (980/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397198	165 (0.670)					coding (1080/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA.........................................................................  <  NC_014034/1397141‑1397098 ............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGG  <  NC_014034/1397198‑1397158                                             ||||||||||||||||||||||||||||||||                                          tcttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGG                  >  1:1663391/10‑101 (MQ=0)  cttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                 >  2:559775/9‑101 (MQ=0)  cttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                 >  2:4315229/9‑101 (MQ=0)  cttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                 >  1:4959908/9‑101 (MQ=0)   ttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGg                >  2:4572235/8‑100 (MQ=0)   ttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGg                >  1:2141492/8‑100 (MQ=0)     cgcccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC              <  1:1579828/96‑1 (MQ=1)     cgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC              >  2:1481213/6‑101 (MQ=1)     cgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC              >  2:4884037/6‑101 (MQ=1)     cgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC              >  1:4200446/6‑101 (MQ=1)      gaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG             >  2:2562468/5‑101 (MQ=1)      gaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG             >  1:2544229/5‑101 (MQ=1)      ccccCGTTTCGATCCACGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG             <  2:2184247/97‑1 (MQ=0)       cccCGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA            <  1:2073811/98‑1 (MQ=0)        ccCGTTTCGACCCCCGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC           <  1:1830242/99‑1 (MQ=0)         cCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACa          >  1:631125/2‑100 (MQ=1)          CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat         >  2:3997987/1‑99 (MQ=1)          CGTTTCGACCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat         <  1:2967903/101‑3 (MQ=0)           GTTTCGATCCACGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc        <  1:4187055/101‑4 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACAATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCTCGCGGGGGGAGCGACatcc       >  1:2841709/1‑97 (MQ=0)            TTTCGACCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcc       <  2:328716/101‑5 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcct      >  1:4619179/1‑96 (MQ=1)              TCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctg     >  2:559334/1‑95 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgt    >  2:4201886/1‑94 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgt    >  1:648705/1‑94 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgt    >  1:2597771/1‑94 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgtt   >  1:3547305/1‑93 (MQ=0)                 ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc  >  1:4626638/1‑92 (MQ=0)                 ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc  >  1:310441/1‑92 (MQ=0)                 ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc  >  2:917367/1‑92 (MQ=0)                                             ||||||||||||||||||||||||||||||||                                          CGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA.........................................................................  <  NC_014034/1397141‑1397098 ............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGG  <  NC_014034/1397198‑1397158 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG