New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1397098 =	183 (1.100)	34 (0.200)	4/136	22.5	0.17	coding (980/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397598	154 (0.630)					coding (1480/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA...........................................................................  <  NC_014034/1397141‑1397098 ............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGC  <  NC_014034/1397598‑1397556                                             ||||||||||||||||||||||||||||||||                                            tcttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGG                    >  1:1663391/10‑101 (MQ=0)  cttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                   >  2:4315229/9‑101 (MQ=0)  cttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                   >  1:4959908/9‑101 (MQ=0)  cttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGG                   >  2:559775/9‑101 (MQ=0)   ttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGg                  >  2:4572235/8‑100 (MQ=0)   ttcgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGg                  >  1:2141492/8‑100 (MQ=0)     cgcccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                <  1:1579828/96‑1 (MQ=1)     cgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                >  2:1481213/6‑101 (MQ=1)     cgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                >  2:4884037/6‑101 (MQ=1)     cgaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC                >  1:4200446/6‑101 (MQ=1)      gaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG               >  1:2544229/5‑101 (MQ=1)      gaccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG               >  2:2562468/5‑101 (MQ=1)      ccccCGTTTCGATCCACGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG               <  2:2184247/97‑1 (MQ=0)       cccCGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA              <  1:2073811/98‑1 (MQ=0)        ccCGTTTCGACCCCCGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             <  1:1830242/99‑1 (MQ=0)         cCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACa            >  1:631125/2‑100 (MQ=1)          CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat           >  2:3997987/1‑99 (MQ=1)          CGTTTCGACCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat           <  1:2967903/101‑3 (MQ=0)           GTTTCGATCCACGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATC          <  1:4187055/101‑1 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACAATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCTCGCGGGGGGAGCGACATCc         >  1:2841709/1‑100 (MQ=0)            TTTCGACCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCc         <  2:328716/101‑2 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCct        >  1:4619179/1‑99 (MQ=1)              TCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctg       >  2:559334/1‑98 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgt      >  2:4201886/1‑97 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgt      >  1:648705/1‑97 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgt      >  1:2597771/1‑97 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgtt     >  1:3547305/1‑96 (MQ=0)                 ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgttc    >  2:917367/1‑95 (MQ=0)                 ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgttc    >  1:4626638/1‑95 (MQ=0)                 ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgttc    >  1:310441/1‑95 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgttcca  >  1:965075/1‑93 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgttcca  >  1:288028/1‑93 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgttcca  >  2:910089/1‑93 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCctgttcca  >  1:1426925/1‑93 (MQ=0)                                             ||||||||||||||||||||||||||||||||                                            CGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA...........................................................................  <  NC_014034/1397141‑1397098 ............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGC  <  NC_014034/1397598‑1397556 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG