New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1397533	242 (1.470)	50 (0.300)	4/134	22.3	0.19	coding (1415/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397971 =	176 (0.720)					intergenic (+275/+1623)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

CCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAA..............................................................................  >  NC_014034/1397488‑1397533 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCGCGCAAAAA  >  NC_014034/1397971‑1398015                                               |||||||||||||||||||||||||||||||||                                              gcagcggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGT                         <  2:2261171/91‑1 (MQ=0)  cagcggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTG                        >  2:2234415/10‑101 (MQ=0)  cagcggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTG                        <  2:189690/92‑1 (MQ=0)  cagcggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTG                        >  1:2928173/10‑101 (MQ=0)   agcggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGG                       <  1:82140/93‑1 (MQ=0)   agcggctgCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGG                       <  1:3526510/93‑1 (MQ=0)    gcggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCACCCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                      <  2:1661797/94‑1 (MQ=0)    gcggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                      <  2:1302225/94‑1 (MQ=0)    gcggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                      <  1:477855/94‑1 (MQ=0)     cggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  1:54187/95‑1 (MQ=1)     cggctgCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  2:206686/95‑1 (MQ=0)      ggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATC                    >  2:3739807/6‑101 (MQ=1)      ggctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGGGGTTC                    >  1:2638458/6‑101 (MQ=0)       gctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  2:1961055/97‑1 (MQ=1)       gctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                   >  1:1007183/5‑101 (MQ=1)       gctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  1:3621198/97‑1 (MQ=1)       gcggCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  2:3585850/97‑1 (MQ=1)        ctgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                  <  2:2718213/98‑1 (MQ=1)        ctgCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                  <  1:1754332/98‑1 (MQ=1)         tgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 <  2:2101507/99‑1 (MQ=1)         tgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 >  2:1840076/3‑101 (MQ=1)         tgCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 <  2:4062006/99‑1 (MQ=1)          ggGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                <  1:642809/99‑1 (MQ=1)          gCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                <  1:3846625/100‑1 (MQ=1)          gCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                >  1:1266709/2‑101 (MQ=1)           CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               <  2:3173527/101‑1 (MQ=1)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC              <  1:3701546/101‑1 (MQ=1)            GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC              >  1:4112736/1‑101 (MQ=1)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCc             <  2:3134417/101‑2 (MQ=1)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCcc            <  1:2411224/101‑3 (MQ=1)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCcc            <  1:4543318/101‑3 (MQ=1)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCcc            <  1:4517310/101‑3 (MQ=1)              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCcc            >  1:2185868/1‑99 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCccgc          <  1:3928218/101‑5 (MQ=1)                 CTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCCcg         >  2:908102/1‑99 (MQ=1)                 CTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCG        >  1:640531/1‑101 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGg       <  2:4644622/101‑2 (MQ=1)                  TCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGg       >  1:2280190/1‑100 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgc      <  2:974032/101‑3 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgc      >  2:4398618/1‑99 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgc      >  1:780972/1‑99 (MQ=1)                   CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgc      >  2:3670788/1‑99 (MQ=1)                    CCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgcg     >  2:3079507/1‑98 (MQ=0)                     CCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgcgt    >  1:2193081/1‑97 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgcgtc   <  2:3830578/101‑6 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgcgtc   <  1:432345/101‑6 (MQ=0)                       CCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgcgtcc  <  1:4175887/101‑7 (MQ=0)                       CCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgcgtcc  <  2:2666269/101‑7 (MQ=0)                       CCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgcgtcc  <  2:2375870/101‑7 (MQ=0)                       CCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC.CCGCGgcgtcc  >  1:1111164/1‑95 (MQ=0)                                               |||||||||||||||||||||||||||||||||                                              CCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAA..............................................................................  >  NC_014034/1397488‑1397533 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCGCGCAAAAA  >  NC_014034/1397971‑1398015 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG