New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1397836 =	158 (0.930)	35 (0.210)	7/138	20.2	0.17	intergenic (+140/+1758)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
	?	NC_014034	= 1434848	183 (0.750)					intergenic (‑627/‑331)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

GGCTGAGGTGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.............................................................................  <  NC_014034/1397881‑1397836 .............................................................................CCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGCCAC  <  NC_014034/1434848‑1434803                                               |||||||||||||||||||||||||||||||                                               ccaagacGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGC                        >  2:3933939/8‑101 (MQ=0) ccaagacGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGC                        <  2:2763280/94‑1 (MQ=0) caaagccGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGC                        <  1:4563536/94‑1 (MQ=0)   aagacGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGG                      >  1:2630314/6‑101 (MQ=0)   aagacGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGG                      <  1:2937617/96‑1 (MQ=0)     gacGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGG                    <  1:1657973/98‑1 (MQ=0)     gacGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGG                    <  2:973888/98‑1 (MQ=0)      gcGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGG                   <  1:2290327/99‑1 (MQ=1)       ggtgggGGGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                  <  2:1299302/95‑1 (MQ=0)       cggggCGGTTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                  <  2:1446/96‑1 (MQ=0)       cGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                  <  1:3586121/100‑1 (MQ=1)        GTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGA                 <  1:483853/101‑1 (MQ=1)          ggCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  1:3386612/3‑101 (MQ=1)             GGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC            <  1:4469845/101‑1 (MQ=1)             GGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC            >  2:1090364/1‑101 (MQ=1)              gtTTTCAATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg           <  2:3612259/99‑2 (MQ=1)              GGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg           <  2:2645958/101‑2 (MQ=1)               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgc          >  1:716399/1‑99 (MQ=1)                TTTCGATCCACGCCCCCGCGGGGGGAGCGCCGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgca         <  2:290430/101‑4 (MQ=1)                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgca         >  1:1343899/1‑98 (MQ=1)                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgca         >  1:180527/1‑98 (MQ=1)                TTTCGACCCACGCCCCCGGGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgca         <  1:4887194/101‑4 (MQ=0)                   CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGCGCGACgcaacc      >  2:1666920/1‑95 (MQ=0)                   CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaacc      <  1:2327536/101‑7 (MQ=1)                   CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaacc      >  2:2755801/1‑95 (MQ=1)                    GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGCGCGACgcaaccg     >  1:1431807/1‑94 (MQ=0)                    GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaaccg     >  2:4132904/1‑94 (MQ=1)                    GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaaccg     >  2:4939102/1‑94 (MQ=1)                     ATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaaccgc    <  2:2637875/101‑9 (MQ=1)                      TCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaaccgcg   <  1:308969/101‑10 (MQ=0)                       CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaaccgcga  >  2:1455824/1‑91 (MQ=0)                       CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaaccgcga  >  1:4696864/1‑91 (MQ=0)                       CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaaccgcga  >  2:4033074/1‑91 (MQ=0)                       CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaaccgcga  >  2:409452/1‑91 (MQ=0)                       CCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcaaccgcga  >  1:1069576/1‑91 (MQ=0)                                               |||||||||||||||||||||||||||||||                                               GGCTGAGGTGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.............................................................................  <  NC_014034/1397881‑1397836 .............................................................................CCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGCCAC  <  NC_014034/1434848‑1434803 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 37 ≤  ATCG