New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | 1397903 = | 147 (0.920) | 50 (0.310) | 9/130 | 17.9 | 0.40 | intergenic (+207/+1691) | RCAP_rcc01307/RCAP_rcc01309 | hypothetical protein/IS66 family transposase |
? | NC_014034 | = 1434777 | NA (NA) | intergenic (‑556/‑402) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator | |||||
Rejected: Position hash score below cutoff. |
TCCCATAGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................. < NC_014034/1397943‑1397903
............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCTGCCCGCGAC < NC_014034/1434777‑1434732
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ccctcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGG > 2:1326626/10‑101 (MQ=0)
ccctcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGG < 2:3725007/92‑1 (MQ=0)
cctcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGGTTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGG > 1:4244618/9‑101 (MQ=0)
cctcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGG > 2:1394814/9‑101 (MQ=0)
cctcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGG < 1:4037226/93‑1 (MQ=0)
ctcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGg > 2:4937241/8‑100 (MQ=0)
ctcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGA < 2:3106645/94‑1 (MQ=0)
ctcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGA < 1:2439499/94‑1 (MQ=0)
ctcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGA > 1:3037247/8‑101 (MQ=0)
ctcatacGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGA > 1:2066794/8‑101 (MQ=0)
tcatagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAG > 1:4987852/7‑101 (MQ=0)
catagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGC < 1:4871950/96‑1 (MQ=1)
catagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGC < 2:3416623/96‑1 (MQ=1)
catagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGC > 1:3994964/6‑101 (MQ=1)
catagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGC < 1:378423/96‑1 (MQ=1)
catagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGC < 1:3715007/96‑1 (MQ=1)
catagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGC > 1:155601/6‑101 (MQ=1)
catagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGC > 2:5007659/6‑101 (MQ=1)
catagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGC > 1:1057341/6‑101 (MQ=1)
atagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCG > 2:4289950/5‑101 (MQ=1)
atagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCG > 1:4949381/5‑101 (MQ=1)
atagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACACCCCCGCGGGGGGAGCG > 2:4539446/5‑101 (MQ=0)
atagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGGCATCAAGTTTCGATCCACGCCCCCGCGGGGGGGGCG > 2:2876833/5‑101 (MQ=0)
tagGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCCAGCCCGGCCGATTGCGGATTTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGc > 1:4264405/4‑100 (MQ=0)
agGTTTCGATCCCCGCCCCCGCGGGGGGAGCGCCGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC < 2:4754906/99‑1 (MQ=0)
agGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC > 2:4361923/3‑101 (MQ=1)
agGTTGCGAGCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC < 2:1077901/99‑1 (MQ=0)
gGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC < 2:2289756/100‑1 (MQ=1)
gGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC < 2:3711699/100‑1 (MQ=1)
gGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC < 2:744896/100‑1 (MQ=1)
gGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC < 1:130646/100‑1 (MQ=1)
gGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC > 1:1258730/2‑101 (MQ=1)
GTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA < 1:1390546/101‑1 (MQ=1)
GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGGGCGACCA > 2:1387470/1‑101 (MQ=1)
GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA < 2:2308317/101‑1 (MQ=1)
TTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAG > 2:4923984/1‑101 (MQ=11)
CGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGTGGAGCGACCAGCgc > 1:4358757/1‑99 (MQ=14)
CGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgc > 1:851139/1‑99 (MQ=14)
CGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgc > 1:3977772/1‑99 (MQ=14)
GATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcg > 2:5018250/1‑98 (MQ=14)
ATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcgc > 1:98905/1‑97 (MQ=14)
CCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcgcaa > 1:700807/1‑95 (MQ=9)
CCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcgcaa > 2:4026885/1‑95 (MQ=9)
CCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcgcaa > 1:2044398/1‑95 (MQ=9)
CACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCCGCgcgcaat < 2:180511/101‑8 (MQ=2)
ACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcgcaaga > 2:2394724/1‑93 (MQ=9)
CGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcgcaatac > 1:1055251/1‑92 (MQ=9)
CGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcgcaatac < 1:238076/101‑10 (MQ=9)
CGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcgcaatac > 2:2088085/1‑92 (MQ=9)
GCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATCTGGTCATCAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCgcgcaatacg > 2:3863057/1‑91 (MQ=255)
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TCCCATAGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................. < NC_014034/1397943‑1397903
............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCTGCCCGCGAC < NC_014034/1434777‑1434732
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|