New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1468815	233 (1.030)	2 (0.010)	2/184	28.6	0.01	coding (1020/1467 nt)	RCAP_rcc01364	signal transduction histidine kinase
	?	NC_014034	= 3565852	200 (0.820)					coding (77/804 nt)	RCAP_rcc03370	LysR family transcriptional regulator
Rejected: Position hash score below cutoff.

TCGGCCACCGTCACCTCGGCGTAATCGCCCGCGGTCAGGATGGTGCCATCGGGCTGCACGTCGTCGGTGAACAGATGCACCGGCCGCGCCGAGACCGTCAGCGTGCCG....................................................................................................  >  NC_014034/1468708‑1468815 ....................................................................................................GCGTGCCGAACGTGTCCTCCAACAGCCGCACCTGTCGGCTGATCGCGCCATGGGTCACGCCCAGCTCCTCGGCGGCGCGGGTCATGCGGCCGTGACGGATCGCGGCCT  <  NC_014034/3565852‑3565753                                                                                                                                                                                                                                                        GATGGTGCCATCGGGCTGCACGTCGTCGGTGAACAGATGCACCGGCCGCGCCGAGACCGTCAGCGTGCCGAACGTGTCCTCCAACAGCCGCACCTGTCGGC                                                                       >  1:3324139/1‑101 (MQ=255)                                               CATCGGGCTGCACGTCGTCGGTGAACAGATGCACCGGCCGCGCCGAGACCGTCAGCGTGCCGAACGTGTCCTCCAACAGCCGCACCTGTCGGCTGATCGCG                                                               <  2:3323876/101‑1 (MQ=255)                                                                                                                                                                                                                  TCGGCCACCGTCACCTCGGCGTAATCGCCCGCGGTCAGGATGGTGCCATCGGGCTGCACGTCGTCGGTGAACAGATGCACCGGCCGCGCCGAGACCGTCAGCGTGCCG....................................................................................................  >  NC_014034/1468708‑1468815 ....................................................................................................GCGTGCCGAACGTGTCCTCCAACAGCCGCACCTGTCGGCTGATCGCGCCATGGGTCACGCCCAGCTCCTCGGCGGCGCGGGTCATGCGGCCGTGACGGATCGCGGCCT  <  NC_014034/3565852‑3565753 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG