| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | 1473412 = | 166 (0.860) | 5 (0.030) | 4/154 | 24.1 | 0.03 | intergenic (+119/+100) | nadE/RCAP_rcc01367 | NAD(+) synthase (glutamine‑hydrolyzing)/hypothetical protein |
| ? | NC_014034 | 2853100 = | 153 (0.620) | intergenic (+98/+130) | RCAP_rcc02661/RCAP_rcc02662 | DeoR family transcriptional regulator/class II aldolase/adducin N‑terminal domain‑containing protein/short‑chain dehydrogenase/reductase family oxidoreductase | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGC.................................................................................................... < NC_014034/1473532‑1473412
....................................................................................................CTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTGCCCTGACGGGCGGGGAAAGGC > NC_014034/2853100‑2853199
GCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCC < 1:3528298/101‑1 (MQ=1)
GCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCC > 1:4761257/1‑101 (MQ=1)
GCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCCCCCGCCCCGCC > 2:3601267/1‑101 (MQ=1)
CCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGCCCc > 1:2340570/1‑100 (MQ=1)
cctccGGCCCTCGGCCTGCCCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTG < 2:1511107/96‑1 (MQ=0)
tcAGGCCCTCGGCCGGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAA < 1:2082030/99‑1 (MQ=1)
cgGGCCCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAAC < 1:2296400/99‑1 (MQ=1)
CCTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTG < 2:980528/101‑1 (MQ=1)
CCTCGCCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTG < 1:2641651/101‑1 (MQ=1)
AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGCCCTCGGCCAGCGCCCGCCCCGC.................................................................................................... < NC_014034/1473532‑1473412
....................................................................................................CTCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGGCTGGCGCCGGCCTCTGGTGTGCTTGGGGATGCGGTCGTGCTGAACCGTTGCCCTGACGGGCGGGGAAAGGC > NC_014034/2853100‑2853199
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|