New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	158222 =	90 (0.410)	46 (0.210)	18/178	17.3	0.37	intergenic (+25/‑205)	parC/tuf1	DNA topoisomerase IV subunit A/translation elongation factor Tu
	?	NC_014034	900814 =	67 (0.270)					intergenic (‑143/‑144)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
Rejected: Position hash score below cutoff.

AAGGCCGCCTGCCAGGGCAGCGCGCGTCCCCGAAACGACACGTCCGGGGGGCACCTTGCTTTTCCTTGGCAAAATACG.CCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCG...................................................................................................  <  NC_014034/158332‑158222 .....................................................................................................CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCAAGACCCGGC  >  NC_014034/900814‑900912                                                                                                                                                                                                                                                                                       ggtgcAAATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTG                                              >  1:1902627/6‑101 (MQ=255)                                                                     tgcAAATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGT                                            >  1:2585050/4‑101 (MQ=9)                                                                     tgcAAATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGT                                            >  1:4272611/4‑101 (MQ=9)                                                                      gcAAATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTC                                           >  2:1484401/3‑101 (MQ=9)                                                                      gcAAATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTC                                           >  2:1048734/3‑101 (MQ=9)                                                                       cAAATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCA                                          >  2:603868/2‑101 (MQ=9)                                                                        aaatccgcCCGGGGGTGCGGGGGCGGACCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAG                                         <  2:2007189/93‑1 (MQ=255)                                                                         AATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGA                                        >  2:4764751/1‑101 (MQ=9)                                                                         AATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGA                                        >  2:4034009/1‑101 (MQ=9)                                                                         AATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGA                                        >  2:2718226/1‑101 (MQ=9)                                                                         AATACGCCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGA                                        >  2:1154767/1‑101 (MQ=9)                                                                         AATACGCCCGGGGGGGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGA                                        >  2:4980466/1‑101 (MQ=9)                                                                            acgcCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGG                                     >  2:3188678/5‑101 (MQ=18)                                                                              gcCCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGG                                   >  1:1245744/3‑101 (MQ=25)                                                                                CCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCA                                 >  2:202147/1‑101 (MQ=37)                                                                                CCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCA                                 >  2:3287116/1‑101 (MQ=37)                                                                                  GGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCGCCCGCGCGCCGCGGCCCGGCAAAAGAACTGGTCAGAGGGGGCAAC                               >  1:4942545/1‑101 (MQ=255)                                                                                    GGGTGGGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTT                             <  2:3329660/101‑1 (MQ=14)                                                                                    GGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTT                             >  2:780808/1‑101 (MQ=34)                                                                                        ggGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGC                         <  1:3433030/99‑1 (MQ=11)                                                                                        GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGC                         >  2:2886669/1‑101 (MQ=31)                                                                                         CGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT                        >  1:1163885/1‑101 (MQ=11)                                                                                          GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA                       >  1:1273078/1‑101 (MQ=1)                                                                                          GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA                       >  1:2052118/1‑101 (MQ=1)                                                                                          GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA                       >  2:1319837/1‑101 (MQ=1)                                                                                          GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA                       >  1:4138075/1‑101 (MQ=1)                                                                                           ggggcccccCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG                      <  2:1490459/92‑1 (MQ=2)                                                                                           GGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG                      >  2:4359155/1‑101 (MQ=1)                                                                                            ggggggccCCCCCGGGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA                     <  2:1343227/93‑1 (MQ=9)                                                                                            GGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA                     <  1:805871/101‑1 (MQ=1)                                                                                             gggggccCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAG                    <  2:1917165/94‑1 (MQ=14)                                                                                             GGCGGGGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAG                    <  2:1570094/101‑1 (MQ=1)                                                                                              ggGGACCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGT                   <  1:1230489/99‑1 (MQ=1)                                                                                              gcgggcCCCCGGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGT                   <  1:1179696/95‑1 (MQ=2)                                                                                              GCGGACCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGT                   <  2:2121871/101‑1 (MQ=1)                                                                                               gGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTC                  <  2:3075725/100‑1 (MQ=1)                                                                                               CGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTC                  >  2:4572976/1‑101 (MQ=1)                                                                                                GGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCG                 >  2:133447/1‑101 (MQ=1)                                                                                                GGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCG                 >  2:3794452/1‑101 (MQ=1)                                                                                                GGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCG                 <  2:2774408/101‑1 (MQ=1)                                                                                                GGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCG                 >  2:1203393/1‑101 (MQ=1)                                                                                                GGAGCCCCCGCGAGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCG                 >  1:2740626/1‑101 (MQ=1)                                                                                                 GAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGG                >  1:718660/1‑101 (MQ=1)                                                                                                 GAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGG                >  2:4920256/1‑101 (MQ=1)                                                                                                 GAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGGCGG                >  2:2228709/1‑101 (MQ=1)                                                                                                  gGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGC               <  2:4722063/100‑1 (MQ=1)                                                                                                                                                                                                                     AAGGCCGCCTGCCAGGGCAGCGCGCGTCCCCGAAACGACACGTCCGGGGGGCACCTTGCTTTTCCTTGGCAAAATACG.CCGGGGGTGCGGGGGCGGAGCCCCCGCGGGTCG...................................................................................................  <  NC_014034/158332‑158222 .....................................................................................................CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCAAGACCCGGC  >  NC_014034/900814‑900912 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG