New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	158228 =	96 (0.400)	57 (0.240)	16/194	19.4	0.46	intergenic (+31/‑199)	parC/tuf1	DNA topoisomerase IV subunit A/translation elongation factor Tu
	?	NC_014034	= 2330172	40 (0.160)					intergenic (+147/+165)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TTCCTTGGCAAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.C....................................................................................................  <  NC_014034/158271‑158228 .........................................CG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGAA  <  NC_014034/2330172‑2330073                                                                                                                                                   ttcttggcgcAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGG                                             >  2:1105057/11‑101 (MQ=1) ttcttggcgcAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGG                                             >  1:3040680/11‑101 (MQ=1)     tggcgcAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCTGCCATCGGCCGATCCGTGCGGCGCT                                         >  1:2130277/7‑101 (MQ=1)     tggcgcAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCT                                         >  1:4254724/7‑101 (MQ=1)     tggcgcAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCT                                         >  1:3967207/7‑101 (MQ=1)       gcgcAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCT                                       >  1:480302/5‑101 (MQ=1)         gcAAATACGCCGGGGGGGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGC                                     <  2:4636624/99‑1 (MQ=1)          cAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                    >  1:2995122/2‑101 (MQ=1)          cAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                    >  2:3496154/2‑101 (MQ=1)          cAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                    >  2:725545/2‑101 (MQ=1)           AAATACGCGGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                   <  2:3618394/101‑1 (MQ=1)           AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                   >  2:4919730/1‑101 (MQ=1)           AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                   >  2:4447053/1‑101 (MQ=1)           AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                   >  1:81999/1‑101 (MQ=1)           AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                   >  1:631406/1‑101 (MQ=1)           AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGGGCGGCGCTCgccgc                                   >  1:1274541/1‑96 (MQ=0)            AATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGGGCGCTGCGCG                                  >  1:3027244/1‑101 (MQ=0)            AATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCG                                  >  1:669691/1‑101 (MQ=1)            AATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGGGCGGCGCTCTGCGCG                                  >  2:1586182/1‑101 (MQ=1)            AATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGGGCGGCGCTCTGCGCG                                  >  1:1260472/1‑101 (MQ=1)              TACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                                >  2:4125038/1‑101 (MQ=1)              TACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                                >  2:90493/1‑101 (MQ=1)              TACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                                >  1:1451432/1‑101 (MQ=1)                 GCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTT                             >  1:4072035/1‑101 (MQ=1)                 GCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGGCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTT                             >  1:3402427/1‑101 (MQ=1)                   CGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                           >  2:1830716/1‑101 (MQ=1)                    GGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                          >  2:2863140/1‑101 (MQ=1)                    GGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                          >  2:4462890/1‑101 (MQ=1)                    GGGGGAGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                          >  1:464253/1‑101 (MQ=1)                     GGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                         >  1:4251385/1‑101 (MQ=1)                     GGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                         >  1:4154730/1‑101 (MQ=1)                          ggGGGGGCGGCCCCCCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:3886890/99‑1 (MQ=0)                          GCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:1953783/101‑1 (MQ=1)                          GCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:4562056/101‑1 (MQ=1)                          GCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:3131150/101‑1 (MQ=1)                          GCGGGGGCGCACCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:494736/101‑1 (MQ=0)                           gGGGGGGGGCCCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG                   <  2:2877786/100‑1 (MQ=0)                            GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGGGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  2:741082/1‑101 (MQ=1)                            GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  2:4748093/1‑101 (MQ=1)                            GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  2:2559844/1‑101 (MQ=1)                            GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  2:1686544/1‑101 (MQ=1)                            GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  1:905673/1‑101 (MQ=1)                               cgcccccCCCCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG               <  2:4254407/94‑1 (MQ=0)                                 gggccCCCCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAG             <  1:4793234/96‑1 (MQ=0)                                  GGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  1:4081553/1‑101 (MQ=1)                                  GGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  2:3711830/1‑101 (MQ=1)                                  GGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  1:1201483/1‑101 (MQ=1)                                  GGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  2:572004/1‑101 (MQ=1)                                  GGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGACCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  1:771653/1‑101 (MQ=1)                                     cCCCCCGCCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCC          <  2:1833358/100‑1 (MQ=0)                                     cCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA         <  1:1180639/100‑1 (MQ=1)                                     GCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA         >  1:21854/1‑101 (MQ=1)                                     GCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA         <  1:564971/101‑1 (MQ=1)                                      CCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA        <  2:4047545/101‑1 (MQ=1)                                      CCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA        <  1:4153193/101‑1 (MQ=1)                                       CCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAG       <  1:4684641/101‑1 (MQ=1)                                        CCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC      <  2:4251068/101‑1 (MQ=1)                                                                                                                                                   TTCCTTGGCAAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.C....................................................................................................  <  NC_014034/158271‑158228 .........................................CG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGAA  <  NC_014034/2330172‑2330073 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG