New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1591605 =167 (0.740)2 (0.010) 2/184 28.6 0.01 coding (819/1434 nt) RCAP_rcc01469 hypothetical protein
?NC_014034 2624552 = 220 (0.900)coding (313/732 nt) hyuE hydantoin racemase
Rejected: Position hash score below cutoff.

GCGGCCAAAGCGCGGCCAGCAGCGGCAGCACCAGGCAGGCGGCAATCAGGAAGCTGACGTCCAGCAACCGATGCGCCGCGAGGGTCAGCGCGATCAGCCCGGCGATG....................................................................................................  <  NC_014034/1591711‑1591605
...................................................................................................CGGCGATGCTGTCGAATTCGTTCTCGGTCGTCACCACTTTGGGCCGGTCGGTTCCGGCGATTTCGCACAATCTGGCCCGTTACGGTCTGGCCGCGCGCTGCGCCCGGG  >  NC_014034/2624552‑2624651
                                                                                                                                                                                                               
                             ACCAGGCAGGCGGCAATCAGGAAGCTGACGTCCAGCAACCGATGCGCCGCGAGGGTCAGCGCGATCAGCCCGGCGATGCTGTCGAATTCGTTCTCGGTCGT                                                                               >  1:964971/1‑101 (MQ=255)
                                         GCAATCAGGAAGCTGACGTCCAGCAACCGATGCGCCGCGAGGGTCAGCGCGATCAGCCCGGCGATGCTGTCGAATTCGTTCTCGGTCGTCACCACTTTGGG                                                                   <  2:964866/101‑1 (MQ=255)
                                                                                                                                                                                                               
GCGGCCAAAGCGCGGCCAGCAGCGGCAGCACCAGGCAGGCGGCAATCAGGAAGCTGACGTCCAGCAACCGATGCGCCGCGAGGGTCAGCGCGATCAGCCCGGCGATG....................................................................................................  <  NC_014034/1591711‑1591605
...................................................................................................CGGCGATGCTGTCGAATTCGTTCTCGGTCGTCACCACTTTGGGCCGGTCGGTTCCGGCGATTTCGCACAATCTGGCCCGTTACGGTCTGGCCGCGCGCTGCGCCCGGG  >  NC_014034/2624552‑2624651

Base quality scores:  ATCG  < 3 ≤  ATCG  < 30 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG