New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	118 (0.520)	23 (0.100)	6/184	24.8	0.13	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	= 1729761	203 (0.830)					intergenic (+135/+18)	RCAP_rcc01597/tpiA	AsnC/Lrp family transcriptional regulator/triose‑phosphate isomerase
Rejected: Position hash score below cutoff.

CCGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC....................................................................................................  <  NC_014034/1640112‑1640006 ...................................................................................................GGGGGCGCTGCCCCCAGACCCCCGGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCCA  <  NC_014034/1729761‑1729662                                                                                                                                                                                                                        GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                                                                     <  1:2351030/101‑1 (MQ=1)          GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGC                                                                                                   <  2:4713203/101‑1 (MQ=1)            TCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCC                                                                                                 <  1:1274237/101‑1 (MQ=1)             CTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCC                                                                                                <  1:4723963/101‑1 (MQ=1)              TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCC                                                                                               <  1:2757361/101‑1 (MQ=1)              TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCC                                                                                               <  1:3006269/101‑1 (MQ=1)               CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                              <  2:4598665/101‑2 (MQ=1)               CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                              <  1:4039338/101‑2 (MQ=1)                GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcg                                                                                             <  1:209572/101‑3 (MQ=1)                GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcg                                                                                             <  2:1102064/101‑3 (MQ=1)                 GCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgg                                                                                            <  1:1348291/101‑4 (MQ=1)                  CCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcggg                                                                                           <  2:3600615/101‑5 (MQ=1)                   CCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggc                                                                                          <  1:2668645/101‑6 (MQ=1)                   CCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggc                                                                                          <  2:3069833/101‑6 (MQ=1)                    CTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcc                                                                                         <  2:76516/101‑7 (MQ=1)                     TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggccc                                                                                        <  1:1131744/101‑8 (MQ=1)                     TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcaa                                                                                        <  2:4545503/101‑8 (MQ=1)                      GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgcgcccc                                                                                       <  2:1023721/101‑9 (MQ=1)                      GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGGGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcccc                                                                                       <  1:3590020/101‑9 (MQ=1)                        TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcccccc                                                                                     <  2:3541815/101‑11 (MQ=1)                        TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcccccc                                                                                     <  1:2325600/101‑11 (MQ=1)                        TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcccccc                                                                                     <  1:1217184/101‑11 (MQ=1)                                                                                                   GGGGGGCGCTGCCCCCAGACCCCCGGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCG          <  2:1067762/101‑1 (MQ=31)                                                                                                                                                                                                                 CCGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC....................................................................................................  <  NC_014034/1640112‑1640006 ...................................................................................................GGGGGCGCTGCCCCCAGACCCCCGGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCCA  <  NC_014034/1729761‑1729662 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG