New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	66 (0.300)	62 (0.280)	20/178	16.4	0.31	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	= 1751815	210 (0.860)					intergenic (+144/‑214)	RCAP_rcc01619/aldB	Fis family transcriptional regulator/aldehyde dehydrogenase
Rejected: Position hash score below cutoff.

GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC..............................................  <  NC_014034/1640105‑1640006 ...............................................................................................................CCCCCCGGGATATTTGGGGCAAGGTGAAAGGCGGA  <  NC_014034/1751815‑1751781                                                                                                     |||||||||||                                    GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                               <  1:2351030/101‑1 (MQ=1)   GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGC                                             <  2:4713203/101‑1 (MQ=1)     TCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCC                                           <  1:1274237/101‑1 (MQ=1)      CTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCC                                          <  1:4723963/101‑1 (MQ=1)       TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCC                                         <  1:2757361/101‑1 (MQ=1)       TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCC                                         <  1:3006269/101‑1 (MQ=1)        CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                        <  2:4598665/101‑1 (MQ=1)        CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                        <  1:4039338/101‑1 (MQ=1)         GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCG                                       <  1:209572/101‑1 (MQ=1)         GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCG                                       <  2:1102064/101‑1 (MQ=1)          GCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGG                                      <  1:1348291/101‑1 (MQ=1)           CCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGG                                     <  2:3600615/101‑1 (MQ=1)            CCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGC                                    <  2:3069833/101‑1 (MQ=1)            CCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGC                                    <  1:2668645/101‑1 (MQ=1)             CTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCC                                   <  2:76516/101‑1 (MQ=1)              TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCaa                                  <  2:4545503/101‑3 (MQ=1)              TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCC                                  <  1:1131744/101‑1 (MQ=1)               GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGCGCCCC                                 <  2:1023721/101‑1 (MQ=1)               GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGGGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCC                                 <  1:3590020/101‑1 (MQ=1)                 TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                               <  2:3541815/101‑1 (MQ=1)                 TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                               <  1:2325600/101‑1 (MQ=1)                 TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                               <  1:1217184/101‑1 (MQ=1)                  GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                              <  1:2385509/101‑1 (MQ=1)                  GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                              <  2:677817/101‑1 (MQ=1)                  GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                              <  1:1394266/101‑1 (MQ=1)                    CGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGG                            <  1:61646/101‑1 (MQ=1)                     GATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGA                           <  1:1326618/101‑1 (MQ=1)                      ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                          <  1:410961/101‑1 (MQ=1)                      ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                          <  1:2740398/101‑1 (MQ=1)                      ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                          <  1:2703832/101‑1 (MQ=1)                       TCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATA                         <  2:2780132/101‑1 (MQ=1)                       TCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATA                         <  2:976903/101‑1 (MQ=1)                        CAGGATCTTTTGAAACATCGCGGTCTTCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                        <  2:4831687/101‑1 (MQ=1)                        CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                        <  1:3496126/101‑1 (MQ=1)                        CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                        <  1:2696537/101‑1 (MQ=1)                        CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                        <  1:1327630/101‑1 (MQ=1)                         AGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATT                       <  1:1001191/101‑1 (MQ=1)                          aGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTT                      <  1:494676/100‑1 (MQ=1)                          GGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTT                      <  1:37101/101‑1 (MQ=1)                           gagCTTTTGAAACAGCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTG                     <  2:1458157/98‑1 (MQ=0)                           GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTG                     <  1:3177635/101‑1 (MQ=1)                           GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTG                     <  1:3639681/101‑1 (MQ=1)                           GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTG                     <  1:4346828/101‑1 (MQ=1)                            ATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTTCCCCGTGGCGGAAGTGGGGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGG                    <  1:639245/101‑1 (MQ=0)                              CTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGGGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGG                  <  1:921750/101‑1 (MQ=1)                               TTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGC                 <  2:52350/101‑1 (MQ=1)                               TTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGC                 <  1:2966012/101‑1 (MQ=1)                               TTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGC                 <  2:1133990/101‑1 (MQ=1)                                TTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCA                <  1:90874/101‑1 (MQ=1)                                 TTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGTGGCAA               <  2:268856/101‑1 (MQ=32)                                 TTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAA               <  1:34394/101‑1 (MQ=1)                                 TTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAA               <  2:2609102/101‑1 (MQ=1)                                 TTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAA               <  1:395581/101‑1 (MQ=1)                                 TTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAA               <  2:2202895/101‑1 (MQ=1)                                  TGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAG              <  1:1392896/101‑1 (MQ=1)                                  TGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAG              <  1:3373030/101‑1 (MQ=1)                                  TGAAACATCGCGGGCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAG              <  1:3713336/101‑1 (MQ=1)                                   GAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGa             <  2:3767922/101‑2 (MQ=1)                                    AAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGat            <  1:4745977/101‑3 (MQ=1)                                     AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG           <  1:2158369/101‑1 (MQ=1)                                      ACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGA          <  2:1231406/101‑1 (MQ=1)                                      ACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGA          <  1:4055126/101‑1 (MQ=1)                                       CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA         <  1:4605961/101‑1 (MQ=1)                                       CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA         <  1:5050196/101‑1 (MQ=1)                                       CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA         <  2:4817480/101‑1 (MQ=1)                                        ATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAA        <  1:2304764/101‑1 (MQ=1)                                          CGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGG      <  1:262078/101‑1 (MQ=1)                                           GCGGTCTCCTTCGTCAGCGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGg     <  2:27481/101‑2 (MQ=1)                                           GCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGg     <  2:3767347/101‑2 (MQ=1)                                           GCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGg     <  1:3600341/101‑2 (MQ=1)                                            CGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGga    <  2:526029/101‑3 (MQ=11)                                            CGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGga    <  2:824212/101‑3 (MQ=11)                                              GTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGgatg  <  2:4295738/101‑5 (MQ=32)                                              GTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGgatg  <  2:4534235/101‑5 (MQ=32)                                                                                                     |||||||||||                                    GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC..............................................  <  NC_014034/1640105‑1640006 ...............................................................................................................CCCCCCGGGATATTTGGGGCAAGGTGAAAGGCGGA  <  NC_014034/1751815‑1751781 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG