New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	115 (0.500)	45 (0.200)	15/188	19.5	0.21	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	2209686 =	222 (0.910)					intergenic (+18/‑253)	cobO/cobQ1	cob(I)yrinic acid a,c‑diamide adenosyltransferase/cobyric acid synthase CobQ
Rejected: Position hash score below cutoff.

CGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC.....................................................................................................  <  NC_014034/1640111‑1640006 ....................................................................................................GGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGGGAGGGAT  >  NC_014034/2209686‑2209785                                                                                                                                                                                                                       GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                                                                      <  1:2351030/101‑1 (MQ=1)         GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.C                                                                                                   <  2:4713203/101‑1 (MQ=1)           TCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCC                                                                                                 <  1:1274237/101‑1 (MQ=1)            CTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCC                                                                                                <  1:4723963/101‑1 (MQ=1)             TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCC                                                                                               <  1:3006269/101‑1 (MQ=1)             TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCC                                                                                               <  1:2757361/101‑1 (MQ=1)              CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCc                                                                                              <  1:4039338/101‑2 (MQ=1)              CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCc                                                                                              <  2:4598665/101‑2 (MQ=1)               GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcg                                                                                             <  2:1102064/101‑3 (MQ=1)               GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcg                                                                                             <  1:209572/101‑3 (MQ=1)                GCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgg                                                                                            <  1:1348291/101‑4 (MQ=1)                 CCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcggg                                                                                           <  2:3600615/101‑5 (MQ=1)                  CCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgggc                                                                                          <  2:3069833/101‑6 (MQ=1)                  CCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgggc                                                                                          <  1:2668645/101‑6 (MQ=1)                   CTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgggcc                                                                                         <  2:76516/101‑7 (MQ=1)                    TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgggccc                                                                                        <  1:1131744/101‑8 (MQ=1)                    TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgggcaa                                                                                        <  2:4545503/101‑8 (MQ=1)                     GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgcgcccc                                                                                       <  2:1023721/101‑9 (MQ=1)                     GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGGGGCGGAAGTGGCGGGGGGCGCTG.CCCCCcgggcccc                                                                                       <  1:3590020/101‑9 (MQ=1)                       TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCc                                                                                      <  1:2325600/101‑2 (MQ=1)                       TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCc                                                                                      <  2:3541815/101‑2 (MQ=1)                       TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCc                                                                                      <  1:1217184/101‑2 (MQ=1)                        GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCcg                                                                                     <  1:2385509/101‑3 (MQ=1)                        GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCcg                                                                                     <  1:1394266/101‑3 (MQ=1)                        GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCcg                                                                                     <  2:677817/101‑3 (MQ=1)                                                                                        atctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAA                    <  2:3787564/94‑1 (MQ=255)                                                                                         tctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAAC                   <  1:1034649/95‑1 (MQ=255)                                                                                         tctcaaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAAC                   <  1:2810902/95‑1 (MQ=255)                                                                                            caaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACG                <  1:3585859/98‑1 (MQ=255)                                                                                             aaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGG               <  2:799373/99‑1 (MQ=255)                                                                                             aaGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGG               >  1:3235714/3‑101 (MQ=255)                                                                                              aGGCCGGGGGCGCTG.CCCCCGGGCCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGT              <  2:4527689/100‑1 (MQ=255)                                                                                              aGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGT              <  1:1135272/100‑1 (MQ=255)                                                                                              aGGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCCTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGT              <  2:2351788/100‑1 (MQ=255)                                                                                               GGCCGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTA             <  2:3024450/101‑1 (MQ=255)                                                                                                gcctGGGGCTCTG.CCCCCGGTCCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTAC            <  1:3389483/97‑1 (MQ=255)                                                                                                 ccGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACA           <  2:3688063/99‑1 (MQ=255)                                                                                                  cGGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAG          <  1:4806201/100‑1 (MQ=255)                                                                                                   GGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGG         <  2:969483/101‑1 (MQ=255)                                                                                                   GGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGG         <  2:4257714/101‑1 (MQ=255)                                                                                                   GGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGG         >  2:3821961/1‑101 (MQ=255)                                                                                                   GGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGG         >  1:3301969/1‑101 (MQ=255)                                                                                                   GGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGG         >  2:2396173/1‑101 (MQ=255)                                                                                                   GGGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGG         >  1:517405/1‑101 (MQ=255)                                                                                                    GGGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGGG        <  1:2135312/101‑1 (MQ=255)                                                                                                                                                                                                                 CGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC.....................................................................................................  <  NC_014034/1640111‑1640006 ....................................................................................................GGGCGCTG.CCCCCGGACCCCCGGGATATTTGTGGCAAGATGAAACAGAGCGTTAGGGATTTGGTAACCATGATCGGGCAAGCTGGCAACACGGTACAGGGAGGGAT  >  NC_014034/2209686‑2209785 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG