New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	98 (0.430)	54 (0.240)	12/184	20.8	0.34	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	= 2590196	111 (0.450)					intergenic (‑95/‑161)	glnE/RCAP_rcc02415	glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

CCGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC....................................................................................................  <  NC_014034/1640112‑1640006 ...................................................................................................GGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCTAGTCTGGCGCCATGAG  <  NC_014034/2590196‑2590097                                                                                                                                                                                                                        GCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCT                                                                                                     <  1:2351030/101‑1 (MQ=1)          GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGC                                                                                                   <  2:4713203/101‑1 (MQ=1)            TCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCC                                                                                                 <  1:1274237/101‑1 (MQ=1)             CTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCC                                                                                                <  1:4723963/101‑1 (MQ=1)              TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCC                                                                                               <  1:2757361/101‑1 (MQ=1)              TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCC                                                                                               <  1:3006269/101‑1 (MQ=1)               CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                                                                              <  1:4039338/101‑1 (MQ=1)               CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                                                                              <  2:4598665/101‑1 (MQ=1)                GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCG                                                                                             <  2:1102064/101‑1 (MQ=1)                GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCG                                                                                             <  1:209572/101‑1 (MQ=1)                 GCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGg                                                                                            <  1:1348291/101‑2 (MQ=1)                  CCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGgg                                                                                           <  2:3600615/101‑3 (MQ=1)                   CCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGggc                                                                                          <  2:3069833/101‑4 (MQ=1)                   CCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGggc                                                                                          <  1:2668645/101‑4 (MQ=1)                    CTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGggcc                                                                                         <  2:76516/101‑5 (MQ=1)                     TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGggccc                                                                                        <  1:1131744/101‑6 (MQ=1)                     TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGggcaa                                                                                        <  2:4545503/101‑6 (MQ=1)                      GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGCGCCCC                                                                                       <  2:1023721/101‑1 (MQ=1)                      GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGGGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCC                                                                                       <  1:3590020/101‑1 (MQ=1)                        TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                                                                     <  1:2325600/101‑1 (MQ=1)                        TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                                                                     <  1:1217184/101‑1 (MQ=1)                        TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                                                                     <  2:3541815/101‑1 (MQ=1)                         GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                                                                                    <  2:677817/101‑1 (MQ=1)                         GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                                                                                    <  1:2385509/101‑1 (MQ=1)                         GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                                                                                    <  1:1394266/101‑1 (MQ=1)                           CGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGG                                                                                  <  1:61646/101‑1 (MQ=1)                            GATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGA                                                                                 <  1:1326618/101‑1 (MQ=1)                             ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                                                                                <  1:410961/101‑1 (MQ=1)                             ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                                                                                <  1:2740398/101‑1 (MQ=1)                             ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                                                                                <  1:2703832/101‑1 (MQ=1)                              TCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATA                                                                               <  2:2780132/101‑1 (MQ=1)                              TCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATA                                                                               <  2:976903/101‑1 (MQ=1)                               CAGGATCTTTTGAAACATCGCGGTCTTCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                                                                              <  2:4831687/101‑1 (MQ=1)                               CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                                                                              <  1:3496126/101‑1 (MQ=1)                               CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                                                                              <  1:2696537/101‑1 (MQ=1)                               CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                                                                              <  1:1327630/101‑1 (MQ=1)                                AGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATT                                                                             <  1:1001191/101‑1 (MQ=1)                                 aGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTt                                                                            <  1:494676/100‑2 (MQ=1)                                 GGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTt                                                                            <  1:37101/101‑2 (MQ=1)                                  GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTtg                                                                           <  1:3177635/101‑3 (MQ=1)                                  GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTtg                                                                           <  1:3639681/101‑3 (MQ=1)                                  GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTtg                                                                           <  1:4346828/101‑3 (MQ=1)                                                                                          cgacccGGCGGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGC                   <  2:3730493/95‑1 (MQ=17)                                                                                           gacccGGCGGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCT                  <  2:4709882/96‑1 (MQ=14)                                                                                           gacccGGCGGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCT                  <  2:1529267/96‑1 (MQ=14)                                                                                           gacccGGCGGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCT                  <  2:2684342/96‑1 (MQ=14)                                                                                           gacccGGCGGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCT                  <  2:1816115/96‑1 (MQ=14)                                                                                               cGGCGGGTGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCTAGTC              <  2:1979594/100‑1 (MQ=14)                                                                                               cGGCGGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCTAGTC              <  1:973285/100‑1 (MQ=14)                                                                                                  CGGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCTAGTCTGG           <  1:2942576/101‑1 (MQ=1)                                                                                                   GGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGGTAGTCctgc          >  1:5049645/1‑97 (MQ=0)                                                                                                   GGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGGTAGGCTGGg          >  1:1845602/1‑100 (MQ=0)                                                                                                   GGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCTAGTCTGGC          <  2:3877318/101‑1 (MQ=1)                                                                                                   GGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCTAGTCTGGC          <  2:2508965/101‑1 (MQ=1)                                                                                                                                                                                                                 CCGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC....................................................................................................  <  NC_014034/1640112‑1640006 ...................................................................................................GGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTGACCCGGGGCTTGCGGCGGCTAGTCTGGCGCCATGAG  <  NC_014034/2590196‑2590097 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG