New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1690765 =285 (1.260)2 (0.010) 2/184 28.6 0.01 coding (2352/2874 nt) uvrA UvrABC system protein A
?NC_014034 2277604 = 250 (1.020)coding (4/1917 nt) RCAP_rcc02117 methyl‑accepting chemotaxis protein
Rejected: Position hash score below cutoff.

ATCTTTTCCCGGATCGAGGGCACGGCCTTGAAGAATTCCTGCGCATCTTCCACCGTCATTTCAAGGACATCGGCGATGCTCTTGTCCTTGAACTTGATCTCCAAAGTC....................................................................................................  <  NC_014034/1690872‑1690765
....................................................................................................CCAAAGTCGCATGTTTCTTGGTCCTTTCAAAAGCAATTCAGTCCACCCGGCGCAGGCCTGCAAGAAAGATCGCGGGCCCGGGTCCTAATGCCAGCCCCCGCCGCGATG  >  NC_014034/2277604‑2277703
                                                                                                                                                                                                                
                                                                     TCGGCGATGCTCTTGTCCTTGAACTTGATCTCCAAAGTCGCATGTTTCTTGGTCCTTTCAAAAGCAATTCAGTCCCCCCGGCGCAGGCCTGCAAGAAAGAT                                        <  1:1286364/101‑1 (MQ=255)
                                                                      CGGCGATGCTCTTGTCCTTGAACTTGATCTCCAAAGTCGCATGTTTCTTGGTCCTTTCAAAAGCAATTCAGTCCACCCGGCGCAGGCCTGCAAGAAAGATa                                       >  2:1286243/1‑100 (MQ=255)
                                                                                                                                                                                                                
ATCTTTTCCCGGATCGAGGGCACGGCCTTGAAGAATTCCTGCGCATCTTCCACCGTCATTTCAAGGACATCGGCGATGCTCTTGTCCTTGAACTTGATCTCCAAAGTC....................................................................................................  <  NC_014034/1690872‑1690765
....................................................................................................CCAAAGTCGCATGTTTCTTGGTCCTTTCAAAAGCAATTCAGTCCACCCGGCGCAGGCCTGCAAGAAAGATCGCGGGCCCGGGTCCTAATGCCAGCCCCCGCCGCGATG  >  NC_014034/2277604‑2277703

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 38 ≤  ATCG