New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1699965 =	52 (0.250)	26 (0.130)	15/168	17.9	0.21	intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
	?	NC_014034	= 2590221	141 (0.580)					intergenic (‑120/‑136)	glnE/RCAP_rcc02415	glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGG...........................................................................................................  <  NC_014034/1700045‑1699965 ..................................................................................................CGCCGAGGCGACCCGGC.GGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTG  <  NC_014034/2590221‑2590133                                                                                   ||||||||||||||||                                                                                           CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGC                                                                                         <  2:4983471/101‑1 (MQ=0) CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGC                                                                                         <  2:4313377/101‑1 (MQ=0)   ACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCG                                                                                       >  1:4787737/1‑101 (MQ=0)     GCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAG                                                                                     <  2:3590649/101‑1 (MQ=0)     GCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGATGAGGGGGTATTTCGCCTCGGCTGACGCCGAG                                                                                     <  1:3109504/101‑1 (MQ=0)      CCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGG                                                                                    >  1:2139008/1‑101 (MQ=0)      CCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGG                                                                                    <  1:2461476/101‑1 (MQ=0)       CTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGC                                                                                   <  2:1564238/101‑1 (MQ=0)       CTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGC                                                                                   <  2:1228129/101‑1 (MQ=0)        TGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCG                                                                                  <  2:681178/101‑1 (MQ=0)         GTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGA                                                                                 <  1:2897567/101‑1 (MQ=0)         GTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGA                                                                                 <  2:2734351/101‑1 (MQ=0)         GTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGA                                                                                 >  2:3480562/1‑101 (MQ=0)            tcgCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC                                                                              <  2:4291865/98‑1 (MQ=0)            TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC                                                                              <  1:4040806/101‑1 (MQ=0)            TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC                                                                              <  1:198195/101‑1 (MQ=0)            TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC                                                                              <  1:2683051/101‑1 (MQ=0)              TCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGG                                                                            >  1:1441376/1‑101 (MQ=2)               CGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGg                                                                           >  2:3552265/1‑100 (MQ=2)                GGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGgg                                                                          >  2:1131170/1‑99 (MQ=2)                   CGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGgccgc                                                                       >  2:1831146/1‑96 (MQ=255)                   CGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGC.GGGG                                                                      <  2:2831891/101‑1 (MQ=255)                    tATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGC.GGGGG                                                                     >  2:3168262/2‑101 (MQ=255)                    GATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGC.GGGGG                                                                     <  1:235422/101‑1 (MQ=255)                        ATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGC.GGGGGgctc                                                                 <  2:2952679/101‑5 (MQ=255)                         TCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGC.GGGGGgctcc                                                                <  2:1689757/101‑6 (MQ=255)                                                                                        GCCTCGGCTGGCGCCGAGGCGACCCGGCGGGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTG  <  1:2707510/101‑1 (MQ=0)                                                                                   ||||||||||||||||                                                                                           CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGG...........................................................................................................  <  NC_014034/1700045‑1699965 ..................................................................................................CGCCGAGGCGACCCGGC.GGGGGCGCTGCCCCCCGCACCCCCCGGGATATTCGCGCCAAGATGACAGGGGCGGGGCATTTGCGCGCCTTG  <  NC_014034/2590221‑2590133 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG