New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1729639 =	181 (0.810)	37 (0.170)	4/182	26.4	0.27	intergenic (+13/+140)	RCAP_rcc01597/tpiA	AsnC/Lrp family transcriptional regulator/triose‑phosphate isomerase
	?	NC_014034	2600961 =	23 (0.090)					intergenic (+23/‑118)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

GGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCCAGAGGGGGCAGCGCCCCCCTGCCC....................................................................................................  <  NC_014034/1729746‑1729639 ...................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAAA  >  NC_014034/2600961‑2601060                                                                                                                                                                                                                                                                                                  gccaAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTG                            >  1:1617845/5‑101 (MQ=31)                                                                                 gccaAGAGGGGGCAGC.CCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTG                            <  2:829121/97‑1 (MQ=14)                                                                                   caAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTTTTTGGCTGCG                          >  1:1141297/3‑101 (MQ=1)                                                                                   caAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                          >  1:2755523/3‑101 (MQ=1)                                                                                   caAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                          >  1:3757949/3‑101 (MQ=1)                                                                                   caAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                          >  1:723345/3‑101 (MQ=1)                                                                                    aAGAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGG                         >  2:376119/2‑101 (MQ=1)                                                                                     aggGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                        <  2:1411508/98‑1 (MQ=1)                                                                                     aggGGGGGCA.CCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                        <  2:3651304/98‑1 (MQ=0)                                                                                      GAGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGgg                       >  1:2970212/1‑99 (MQ=1)                                                                                       AGGGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCCGCGGCGC                      >  1:4617976/1‑101 (MQ=1)                                                                                       AGGGGCCGGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGC                      <  2:585603/101‑1 (MQ=17)                                                                                         GGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCcg                    >  1:731060/1‑99 (MQ=1)                                                                                         GGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCAG                    >  1:2014840/1‑101 (MQ=1)                                                                                         GGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAG                    <  2:2624251/101‑1 (MQ=1)                                                                                         GGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAG                    >  1:4677568/1‑101 (MQ=1)                                                                                         GGGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAG                    >  2:579613/1‑101 (MQ=1)                                                                                          GGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC                   >  2:554659/1‑101 (MQ=1)                                                                                          GGGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC                   <  2:3268309/101‑1 (MQ=1)                                                                                           gggccgcCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC                   <  2:4785989/94‑1 (MQ=0)                                                                                           ggccagcCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC                   <  1:3143250/94‑1 (MQ=0)                                                                                           GGCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCG                  >  1:1833766/1‑101 (MQ=1)                                                                                            GCAGCG.CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCAGCGG                 >  2:1839293/1‑101 (MQ=1)                                                                                              ccgcgCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC                <  1:359671/96‑1 (MQ=1)                                                                                               ggcCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT               <  1:4597049/98‑1 (MQ=1)                                                                                               cgcCCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT               <  2:4029375/98‑1 (MQ=2)                                                                                               cgcCCCCCCCGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT               <  2:4597380/98‑1 (MQ=2)                                                                                               cccCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT               <  1:3797566/98‑1 (MQ=11)                                                                                               agcgCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT               >  2:2141541/5‑101 (MQ=1)                                                                                               agcgCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT               >  1:3824307/5‑101 (MQ=1)                                                                                                ccCCCGCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA              <  2:4055246/99‑1 (MQ=2)                                                                                                  gCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTTGATGCAGCGCAGCGGCTAAT            >  2:3363573/2‑101 (MQ=0)                                                                                                  gCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAT            <  2:2077595/100‑1 (MQ=1)                                                                                                   CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTTCTTGTTTGGCTGCGGCGCGGCGGCTAATC           >  2:4140367/1‑101 (MQ=0)                                                                                                   CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC           <  2:4109658/101‑1 (MQ=1)                                                                                                   CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC           <  1:1221601/101‑1 (MQ=1)                                                                                                   CCCCCGCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC           <  1:3585640/101‑1 (MQ=0)                                                                                                                                                                                                                  GGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCCAGAGGGGGCAGCGCCCCCCTGCCC....................................................................................................  <  NC_014034/1729746‑1729639 ...................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAAA  >  NC_014034/2600961‑2601060 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG