New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1732710 =	58 (0.250)	37 (0.160)	18/190	18.2	0.22	intergenic (‑134/‑269)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	2555844 =	212 (0.870)					intergenic (‑707/+39)	mraZ/RCAP_rcc02384	protein MraZ/Mrp/NBP35 family protein
Rejected: Position hash score below cutoff.

AGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC....................................................................................................  <  NC_014034/1732814‑1732710 ....................................................................................................GGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCAGGCGCGGCGAAATCAGGCCACGCCGCGCCCGATCAGCTCTGCCGCGATCGCCGCATAGGCCCCGGCCGCGGCG  >  NC_014034/2555844‑2555943                                                                                                                                                                                                                    AAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGGGCAAATACGCCGGGGGTGCGGGGGCG                                                                                                     >  1:3036860/1‑101 (MQ=1)      AAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCG                                                                                                     >  2:1903939/1‑101 (MQ=1)      AAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGGGCGCGGGCG                                                                                                     >  2:2410736/1‑101 (MQ=0)       AGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGG                                                                                                    <  2:4421168/101‑1 (MQ=1)        GCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGA                                                                                                   >  2:3956830/1‑101 (MQ=1)          GGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGC                                                                                                 >  1:2919850/1‑101 (MQ=1)          GGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGC                                                                                                 >  1:4216438/1‑101 (MQ=1)           GGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                                >  2:4442256/1‑101 (MQ=1)           GGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                                >  2:1945757/1‑101 (MQ=1)           GGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                                >  1:3440139/1‑101 (MQ=1)            gcCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCC                                                                                               <  2:2554028/99‑1 (MQ=1)             GCCCTTGCCTTTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCC                                                                                              <  2:2325672/101‑1 (MQ=1)             GCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCC                                                                                              >  1:3132288/1‑101 (MQ=1)             GCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCC                                                                                              <  1:1353280/101‑1 (MQ=1)               ccgTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG                                                                                            >  1:3737525/4‑101 (MQ=1)               CCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG                                                                                            >  2:4520637/1‑101 (MQ=1)                  TGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCC                                                                                         <  1:3273841/101‑1 (MQ=32)                     CTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGG                                                                                      >  2:2229980/1‑101 (MQ=35)                     CTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGG                                                                                      >  1:4916362/1‑101 (MQ=35)                      TGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGT                                                                                     >  1:4882646/1‑101 (MQ=37)                      TGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGT                                                                                     >  1:4110717/1‑101 (MQ=37)                      TGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGT                                                                                     >  2:742756/1‑101 (MQ=37)                       GTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGgc                                                                                    >  1:3023627/1‑99 (MQ=25)                       GTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTC                                                                                    >  1:3702796/1‑101 (MQ=38)                       GTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTC                                                                                    >  2:320739/1‑101 (MQ=38)                         TGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGC                                                                                  >  2:4484825/1‑101 (MQ=39)                         TGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGC                                                                                  >  1:4715166/1‑101 (MQ=39)                         TGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGC                                                                                  >  2:4067080/1‑101 (MQ=39)                          GACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCC                                                                                 >  1:2293994/1‑101 (MQ=39)                             GCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCG                                                                              >  2:4255545/1‑101 (MQ=39)                             GCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCG                                                                              >  1:687130/1‑101 (MQ=39)                              CGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGg                                                                             >  1:616667/1‑100 (MQ=39)                               GGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGgc                                                                            >  2:2286929/1‑99 (MQ=39)                                    GCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGgccccgc                                                                       >  2:254259/1‑94 (MQ=255)                                    GCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGgccccgc                                                                       >  1:1327336/1‑94 (MQ=255)                                    GCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGgcccccc                                                                       >  1:4261380/1‑94 (MQ=255)                                      ATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGgccccgccg                                                                     >  2:462330/1‑92 (MQ=255)                                                                                                                                                                                                               AGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC....................................................................................................  <  NC_014034/1732814‑1732710 ....................................................................................................GGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCAGGCGCGGCGAAATCAGGCCACGCCGCGCCCGATCAGCTCTGCCGCGATCGCCGCATAGGCCCCGGCCGCGGCG  >  NC_014034/2555844‑2555943 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG