New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1803571177 (0.790)2 (0.010) 2/184 28.6 0.01 coding (1954/2124 nt) ligA DNA ligase
?NC_014034 = 2128180 193 (0.790)coding (2213/2742 nt) gyrA DNA gyrase subunit A
Rejected: Position hash score below cutoff.

TGACGCATCTGACCGTCGAGCCCGCCGTGCCGCGCGCAAGTGACAGCCCGGTGGCCGGTCTGACCGTCGTCTTCACCGGCACGCTCGAACGGATGACCCGGGCCGAGG....................................................................................................  >  NC_014034/1803464‑1803571
....................................................................................................GGCCGAGGGGGACAAGGTCGTCTCGATGTCGGTCATTCGCCATTTCGAGGCCGAACCCTGGGAACGCGACGCCTTTGTCAAGCGCTACCGCGCGGAACTGGGCGGCGA  <  NC_014034/2128180‑2128081
                                                                                                                                                                                                                
                                 GCGCAAGTGACAGCCCGGTGGCCGGTCTGACCGTCGTCTTCACCGGCACGCTCGAACGGATGACCCGGGCCGAGGGGGACAAGGTCGTCTCGATGTCGGTC                                                                            >  1:3282590/1‑101 (MQ=255)
                                              CCCGGTGGCCGGTCTGACCGTCGTCTTCACCGGCACGCTCGAACGGATGACCCGGGCCGAGGGGGACAAGGTCGTCTCGATGTCGGTCATTCGCCATTTCG                                                               <  2:3282328/101‑1 (MQ=255)
                                                                                                                                                                                                                
TGACGCATCTGACCGTCGAGCCCGCCGTGCCGCGCGCAAGTGACAGCCCGGTGGCCGGTCTGACCGTCGTCTTCACCGGCACGCTCGAACGGATGACCCGGGCCGAGG....................................................................................................  >  NC_014034/1803464‑1803571
....................................................................................................GGCCGAGGGGGACAAGGTCGTCTCGATGTCGGTCATTCGCCATTTCGAGGCCGAACCCTGGGAACGCGACGCCTTTGTCAAGCGCTACCGCGCGGAACTGGGCGGCGA  <  NC_014034/2128180‑2128081

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG