New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1996687253 (1.170)3 (0.010) 3/176 26.9 0.01 coding (1509/1587 nt) RCAP_rcc01843 family 13 glycosyl hydrolase
?NC_014034 3703918 = 216 (0.880)coding (194/2640 nt) mutS DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

CCTGCCCGATCCGGTGCTGGGCTTCCGGCGCGAAACCGACACGGAAAGCCTGACCTGCCTCTTCAATCTCGGCCCCGATCCGGTGACTCTCAGCGGGATTATCGGCACGCCG....................................................................................................  >  NC_014034/1996576‑1996687
....................................................................................................ATCGGCACGCCGCACATCGGGATTTCCTCGCCCAGATGCAGGCCGCGTTTGGTCAGCGCGATATCCAGCGCCGCCGCCGCCGCCACGGCATCGTCAAAGAACATCTCGTAGA  >  NC_014034/3703918‑3704017
                                                                                                                                                                                                                    
            GGTGCTGGGCTTCCGGCGCGAAACCGACACGGAAAGCCTGACCTGCCTCTTCAATCTCGGCCCCGATCCGGTGACTCTCAGCGGGATTATCGGCACGCCGC                                                                                                     >  2:1178170/1‑101 (MQ=255)
                                                 CTGACCTGCCTCTTCAATCTCGGCCCCGATCCGGTGACTCTCAGCGGGATTATCGGCACGCCGCACATCGGGATTTCCTCGCCCAGATGCAGGCCGCGTTT                                                                >  2:540815/1‑101 (MQ=255)
                                                         CCTCTTCAATCTCGGCCCCGATCCGGTGACTCTCAGCGGGATTATCGGCACGCCGCACATCGGGATTTCCTCGCCCAGATGCAGGCCGCGTTTGGTCAGCG                                                        <  1:540894/101‑1 (MQ=255)
                                                                                                                                                                                                                    
CCTGCCCGATCCGGTGCTGGGCTTCCGGCGCGAAACCGACACGGAAAGCCTGACCTGCCTCTTCAATCTCGGCCCCGATCCGGTGACTCTCAGCGGGATTATCGGCACGCCG....................................................................................................  >  NC_014034/1996576‑1996687
....................................................................................................ATCGGCACGCCGCACATCGGGATTTCCTCGCCCAGATGCAGGCCGCGTTTGGTCAGCGCGATATCCAGCGCCGCCGCCGCCGCCACGGCATCGTCAAAGAACATCTCGTAGA  >  NC_014034/3703918‑3704017

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG