New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221934 =193 (0.840)17 (0.070) 2/188 28.9 0.04 coding (723/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222077 635 (2.590)coding (580/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

TCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGAGCCCACGCATCCGACG....................................................................................................  <  NC_014034/222030‑221934
................................................................................................GGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG  <  NC_014034/222077‑221978
                                                                                                                                                                                                     
TCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGAGCCCACGCATCCGACGGACC                                                                                                  <  2:227386/101‑1 (MQ=1)
                                                                                    gaccgATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA              >  2:2054555/6‑101 (MQ=0)
                                                                                    gaccgATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA              <  1:3479273/96‑1 (MQ=0)
                                                                                     accgATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC             <  2:1307959/97‑1 (MQ=0)
                                                                                     accgATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC             <  2:2092102/97‑1 (MQ=0)
                                                                                     accgATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC             <  2:4311654/97‑1 (MQ=0)
                                                                                       cgATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG           >  1:3925939/3‑101 (MQ=0)
                                                                                       cgATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG           <  1:1160963/99‑1 (MQ=0)
                                                                                       cgATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATACCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG           >  2:1030616/3‑101 (MQ=0)
                                                                                        gATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA          >  1:3192344/2‑101 (MQ=0)
                                                                                         ATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt         <  1:276401/101‑2 (MQ=0)
                                                                                         ATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt         >  2:2950241/1‑100 (MQ=0)
                                                                                         ATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt         <  2:2630990/101‑2 (MQ=0)
                                                                                          TCCGACGGACCCGCCCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc        <  2:3774700/101‑3 (MQ=0)
                                                                                          TCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc        >  1:1518134/1‑99 (MQ=0)
                                                                                          TCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc        <  2:4670301/101‑3 (MQ=0)
                                                                                           cctACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC       >  2:1531186/4‑101 (MQ=9)
                                                                                           CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  2:4007734/101‑1 (MQ=0)
                                                                                           CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  2:165598/101‑1 (MQ=0)
                                                                                           CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  1:548009/101‑1 (MQ=0)
                                                                                           CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  1:2040829/101‑1 (MQ=0)
                                                                                           CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  1:1099110/101‑1 (MQ=0)
                                                                                            ctACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG      <  2:2965383/99‑1 (MQ=9)
                                                                                            CGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG      <  2:1282579/101‑1 (MQ=0)
                                                                                             tACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA     >  2:201968/2‑101 (MQ=2)
                                                                                             GACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA     >  2:2781320/1‑101 (MQ=0)
                                                                                             GACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA     >  1:1598566/1‑101 (MQ=0)
                                                                                              ACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC    >  1:852812/1‑101 (MQ=0)
                                                                                              ACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC    >  2:4813974/1‑101 (MQ=0)
                                                                                              ACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC    <  1:4745650/101‑1 (MQ=0)
                                                                                               CGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC   <  1:2028720/101‑1 (MQ=0)
                                                                                               CGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC   <  2:4804293/101‑1 (MQ=2)
                                                                                                                                                                                                     
TCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGAGCCCACGCATCCGACG....................................................................................................  <  NC_014034/222030‑221934
................................................................................................GGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG  <  NC_014034/222077‑221978

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG