New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =262 (1.110)53 (0.230) 42/192 10.1 0.14 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222101 387 (1.580)coding (556/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC....................................................................................................  <  NC_014034/222048‑221953
....................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG  <  NC_014034/222101‑222006
                                                                                                ||||                                                                                                
TCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACC                                                                                                 <  1:2790264/101‑1 (MQ=0)
 CCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC                                                                                                <  2:4164793/101‑1 (MQ=0)
 CCCACGGACCGGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCGACGGACCC                                                                                                >  1:4365902/1‑101 (MQ=0)
  cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                               <  1:1491952/99‑1 (MQ=0)
   gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                                                              >  1:4918931/2‑101 (MQ=0)
   ccCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                                                              <  1:4590839/99‑1 (MQ=0)
    ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGGCCCGAC                                                                                             >  1:3676861/1‑101 (MQ=0)
      GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                           >  1:4435786/1‑101 (MQ=0)
      GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGCCCG                                                                                           >  2:4102895/1‑101 (MQ=0)
      GGACCCGACCCATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                           <  2:576216/101‑1 (MQ=0)
       gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                                                          >  1:3362093/4‑101 (MQ=0)
        acCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAc                                                                                         >  1:1534433/3‑100 (MQ=0)
         cCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATC                                                                                        <  2:907900/100‑1 (MQ=0)
          CCGACCGATCCCACGGACCCGACCTATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCC                                                                                       >  1:1665519/1‑101 (MQ=0)
           CGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                                                      <  2:4006000/101‑1 (MQ=12)
            gtggGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                                                     >  2:4000632/5‑101 (MQ=0)
            GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGCCCGATCCCA                                                                                     >  1:1399991/1‑101 (MQ=0)
            GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGACCCGACCGATCCgc                                                                                     >  2:3175577/1‑99 (MQ=0)
            GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGACCCCA                                                                                     >  1:289005/1‑101 (MQ=0)
             ACCGATCCCACGGACCCGACGGATCCCACGGACCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                                                    <  1:674405/101‑1 (MQ=0)
              CCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACG                                                                                   <  1:2017682/101‑1 (MQ=2)
               CGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGc                                                                                  >  2:4821217/1‑100 (MQ=0)
               CGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACACGACCGATCCGACGGACCCGACCGATCCCACGG                                                                                  >  2:441502/1‑101 (MQ=0)
                GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATGCGACGGACCCGACCGATCCCACCGA                                                                                 >  2:1146121/1‑101 (MQ=0)
                 ATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCCCGGAC                                                                                >  1:1784591/1‑101 (MQ=0)
                 ATCCCACGAACCCGACCGATCCCACGGATCCAACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAC                                                                                <  1:4182538/101‑1 (MQ=0)
                    CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             <  2:1364407/101‑1 (MQ=0)
                    CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             <  1:1645632/101‑1 (MQ=0)
                    CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             <  1:4846360/101‑1 (MQ=0)
                    CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             <  1:92785/101‑1 (MQ=0)
                     CACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGA                                                                            >  1:694419/1‑101 (MQ=0)
                     CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACGGATCCCACGGACCCGA                                                                            >  2:2345867/1‑101 (MQ=0)
                      ACGGCCCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC                                                                           <  1:1110213/101‑1 (MQ=0)
                      ACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC                                                                           >  2:4073156/1‑101 (MQ=0)
                       ctGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACc                                                                          <  1:341954/99‑2 (MQ=1)
                       CGGCCCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACc                                                                          <  1:2781043/101‑2 (MQ=0)
                       CGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACc                                                                          <  2:4711885/101‑2 (MQ=0)
                        GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG                                                                         >  2:1269246/1‑101 (MQ=9)
                        GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAACCGACGG                                                                         >  2:3261507/1‑101 (MQ=9)
                        GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCTCACGGACCCGAgcg                                                                         >  2:4141322/1‑98 (MQ=0)
                        GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCCCGGACCCGACcg                                                                         >  2:4877601/1‑99 (MQ=0)
                         GACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGA                                                                        >  1:2388024/1‑101 (MQ=9)
                          ACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGAC                                                                       >  2:3836376/1‑101 (MQ=9)
                           CCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACC                                                                      >  1:124880/1‑101 (MQ=12)
                             CGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc                                                                    <  1:5005436/101‑2 (MQ=12)
                             CGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc                                                                    >  1:3502055/1‑100 (MQ=9)
                             CGACCGATCCCACGAATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc                                                                    <  2:3361830/101‑2 (MQ=255)
                              GACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCca                                                                   >  1:2949440/1‑99 (MQ=12)
                               ACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCAC                                                                  >  2:3391471/1‑101 (MQ=255)
                                  GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACCGc                                                               >  1:2075276/1‑100 (MQ=14)
                                                        cgACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCC                                         >  2:592236/3‑101 (MQ=255)
                                                          ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCAC                                       <  2:546907/101‑1 (MQ=255)
                                                          ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCAC                                       <  1:3708418/101‑1 (MQ=255)
                                                           CGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACG                                      <  1:2969496/101‑1 (MQ=255)
                                                            GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACcg                                     >  2:4481193/1‑99 (MQ=255)
                                                            GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGG                                     >  2:4233825/1‑101 (MQ=255)
                                                             GACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGA                                    >  1:3242147/1‑101 (MQ=255)
                                                                CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                 <  2:3910294/101‑1 (MQ=2)
                                                                CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                 <  2:3816479/101‑1 (MQ=2)
                                                                 CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                                >  1:2266744/1‑101 (MQ=0)
                                                                  GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCca                               >  1:604803/1‑99 (MQ=255)
                                                                     CGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCG                            >  1:4004815/1‑101 (MQ=255)
                                                                       ATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGAT                          <  1:3739933/101‑1 (MQ=255)
                                                                       ATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGAT                          >  1:4646883/1‑101 (MQ=255)
                                                                        TCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATC                         <  1:3029362/101‑1 (MQ=255)
                                                                        TCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATC                         >  1:2631175/1‑101 (MQ=255)
                                                                         CCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCC                        <  2:1212887/101‑1 (MQ=255)
                                                                          CCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCg                       <  2:4452060/101‑2 (MQ=255)
                                                                          CCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCg                       <  2:4435467/101‑2 (MQ=255)
                                                                          CCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCg                       <  2:1534303/101‑2 (MQ=255)
                                                                           CACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCga                      >  2:755156/1‑99 (MQ=255)
                                                                           CACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCga                      >  2:212951/1‑99 (MQ=255)
                                                                           CACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCga                      <  2:694330/101‑3 (MQ=255)
                                                                                             cACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA    <  1:4474281/100‑1 (MQ=0)
                                                                                              ACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC   <  1:2490084/101‑1 (MQ=0)
                                                                                               CGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG  <  2:3957605/101‑1 (MQ=0)
                                                                                                ||||                                                                                                
TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC....................................................................................................  <  NC_014034/222048‑221953
....................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG  <  NC_014034/222101‑222006

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG