New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	221962 =	531 (2.330)	49 (0.220)	22/186	16.1	0.07	coding (695/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222062	741 (3.030)					coding (595/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC..................................................................................................  <  NC_014034/222057‑221962 .......................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA  <  NC_014034/222062‑221972                                                                                                 |||||||                                                                                            CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC                                                                                               <  1:307033/101‑1 (MQ=14)    GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCc                                                                                            >  1:4690137/1‑100 (MQ=14)     ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                                                           >  2:239454/1‑101 (MQ=0)       CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                                                         >  2:4946715/1‑101 (MQ=0)       CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                                                         <  1:2774506/101‑1 (MQ=2)        GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACcgc                                                                                        >  1:2075276/1‑98 (MQ=14)        GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGAATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                                                        >  1:2473055/1‑101 (MQ=0)         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAGCCCACGGAC                                                                                       >  2:487799/1‑101 (MQ=9)         ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                                                       >  1:4820356/1‑101 (MQ=0)           CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACCGACCC                                                                                     >  1:4588052/1‑101 (MQ=0)            CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                                                                    >  1:653991/1‑101 (MQ=0)            CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                                                                    <  1:4180069/101‑1 (MQ=0)              ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                                                                  <  2:777098/101‑1 (MQ=0)               CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                                                 >  1:733085/1‑101 (MQ=0)               CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                                                 <  2:1222591/101‑1 (MQ=0)               CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                                                 <  1:39660/101‑1 (MQ=0)               CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                                                 <  1:3678473/101‑1 (MQ=0)               CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAGCCGACGGACCCCACGGACCCGACC                                                                                 >  2:1710091/1‑101 (MQ=0)                GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                                                >  1:2600570/1‑101 (MQ=0)                GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                                                <  1:2427144/101‑1 (MQ=0)                GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                                                >  2:3409405/1‑101 (MQ=0)                GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                                                >  1:761381/1‑101 (MQ=0)                 GATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGA                                                                               >  2:4952511/1‑101 (MQ=0)                   TCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGCCCGATC                                                                             >  2:2175566/1‑101 (MQ=0)                      ggCCGATCCCGCGGACCCCACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCA                                                                          <  2:4980519/99‑1 (MQ=0)                       ACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGCCCGATCCCAC                                                                         >  1:1696728/1‑101 (MQ=0)                       ACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGAACCCAC                                                                         >  2:3368208/1‑101 (MQ=0)                        CCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCCCG                                                                        >  1:4862407/1‑101 (MQ=0)                         CGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCCATCCCCCGG                                                                       >  1:4769152/1‑101 (MQ=0)                          GATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCAATCCCACGGA                                                                      >  1:3687281/1‑101 (MQ=0)                           ATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCCCGGACCCGACCGATCCCACGGAc                                                                     >  1:2029629/1‑100 (MQ=2)                            TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAcc                                                                    <  2:478162/101‑3 (MQ=17)                                cgGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                <  1:3456392/99‑1 (MQ=9)                                ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                >  2:2346175/1‑101 (MQ=17)                                 CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                                                               <  2:3429960/101‑1 (MQ=11)                                 CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                                                               <  2:530881/101‑1 (MQ=11)                                 CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                                                               <  2:3300550/101‑1 (MQ=11)                                  gcACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                              <  2:1007474/99‑1 (MQ=0)                                  GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                              >  2:673328/1‑101 (MQ=11)                                  GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                              >  1:2560862/1‑101 (MQ=11)                                  GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                              >  2:5005867/1‑101 (MQ=11)                                   GACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA                                                             >  1:1458039/1‑101 (MQ=0)                                    gCCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAT                                                            <  2:1836190/100‑1 (MQ=0)                                     CCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATC                                                           <  2:3384951/101‑1 (MQ=0)                                      CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                          >  2:3358291/1‑101 (MQ=0)                                      CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                          <  1:3437523/101‑1 (MQ=0)                                            GATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAGCCGACCGATCCCACGGA                                                    >  2:2279037/1‑101 (MQ=0)                                                                               CGATCCCACGGACCCGCCGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGG                 <  2:3970353/101‑1 (MQ=255)                                                                                      ACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGcc          >  1:930666/1‑99 (MQ=0)                                                                                             CGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAACCC   >  1:3287507/1‑101 (MQ=9)                                                                                              GACGGACCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCA  <  2:893606/101‑1 (MQ=2)                                                                                                 |||||||                                                                                            CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC..................................................................................................  <  NC_014034/222057‑221962 .......................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA  <  NC_014034/222062‑221972 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG