New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221968 =707 (3.210)55 (0.250) 3/180 27.2 0.11 coding (689/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222128 217 (0.890)coding (529/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA..................................................................  <  NC_014034/222065‑221968
............................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222128‑222073
                                                                                                  ||||||||||                                                        
CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                                 <  1:385135/101‑1 (MQ=12)
 CTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                                <  2:2965383/101‑1 (MQ=9)
  TACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA                                                               >  2:201968/1‑101 (MQ=2)
   ACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                                                              >  1:852812/1‑101 (MQ=0)
     GGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG                                                            >  2:744188/1‑101 (MQ=0)
        CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAcc                                                         <  1:307033/101‑3 (MQ=14)
         CCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                                                        >  1:1405262/1‑101 (MQ=2)
          CGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                                                       <  2:4126767/101‑1 (MQ=0)
           GACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCc                                                      >  1:3782023/1‑100 (MQ=2)
           GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCc                                                      >  1:4690137/1‑100 (MQ=14)
             CCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                                                    >  2:2116089/1‑101 (MQ=2)
              CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                   <  1:2774506/101‑1 (MQ=2)
              CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                   >  2:4946715/1‑101 (MQ=0)
               GATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                                                  >  1:3195730/1‑101 (MQ=0)
               GATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                                                  >  1:3653983/1‑101 (MQ=0)
                ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAGCCCACGGAC                                                 >  2:487799/1‑101 (MQ=9)
                ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                 >  1:4820356/1‑101 (MQ=0)
                  cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                                               <  1:1307073/98‑1 (MQ=12)
                   CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                              >  1:653991/1‑101 (MQ=0)
                   CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                              <  1:4180069/101‑1 (MQ=0)
                     ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                                            >  1:667557/1‑101 (MQ=17)
                      CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           >  1:733085/1‑101 (MQ=0)
                      CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           <  2:1222591/101‑1 (MQ=0)
                      CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           <  1:39660/101‑1 (MQ=0)
                      CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           <  1:3678473/101‑1 (MQ=0)
                       GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG                                          >  2:2834383/1‑101 (MQ=11)
                       GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          >  2:3409405/1‑101 (MQ=0)
                       GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          >  1:2600570/1‑101 (MQ=0)
                       GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          >  1:761381/1‑101 (MQ=0)
                       GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          <  1:2427144/101‑1 (MQ=0)
                        GATCCGACTGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA                                         <  1:4362360/101‑1 (MQ=0)
                        GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA                                         >  1:366654/1‑101 (MQ=0)
                        GATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA                                         >  1:973790/1‑101 (MQ=0)
                        GATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGA                                         >  2:4952511/1‑101 (MQ=0)
                         ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGCCCGAT                                        >  1:4639456/1‑101 (MQ=0)
                         ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAT                                        >  2:472191/1‑101 (MQ=1)
                         ATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGCTCCCACGGCCCCGACCGcc                                        >  1:1948654/1‑99 (MQ=0)
                                    CCCACGGACCCGCCCGATCCCACGGATCCGCCCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                             <  2:3423102/101‑1 (MQ=0)
                                       gCGGACCCGACCGATCCCGCGGATCCGGCCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                          <  1:2944291/100‑1 (MQ=12)
                                       ACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                          >  2:4813974/1‑101 (MQ=0)
                                         GGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG                        >  1:2473067/1‑101 (MQ=0)
                                          GACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGA                       >  2:272983/1‑101 (MQ=0)
                                           ACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT                      >  2:3150690/1‑101 (MQ=2)
                                             CCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                    <  2:3190443/101‑1 (MQ=0)
                                                ACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                 <  2:3316633/101‑1 (MQ=0)
                                                ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                 >  2:239454/1‑101 (MQ=0)
                                                 CCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                <  1:1185566/101‑1 (MQ=0)
                                                 CCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                <  1:1042799/101‑1 (MQ=0)
                                                 CCGATCCCACGGATCCGACCGATCCCGCGGATCCGACCGATCCCACGGATCCGCCCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACG                <  1:2170178/101‑1 (MQ=0)
                                                  CGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGc               >  1:1569239/1‑100 (MQ=0)
                                                   GATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA              >  1:3325267/1‑101 (MQ=0)
                                                     TCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACC            <  1:592315/101‑1 (MQ=9)
                                                     TCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACC            <  1:371912/101‑1 (MQ=9)
                                                      cctACGGATCCGACCGATCCCACGGATCCGNCCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC           <  1:3021164/98‑1 (MQ=12)
                                                      cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC           <  2:3303988/98‑1 (MQ=12)
                                                       ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG          <  2:4877827/99‑1 (MQ=17)
                                                        tACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA         <  1:139366/100‑1 (MQ=17)
                                                        tACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA         <  2:4994260/100‑1 (MQ=17)
                                                         ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC        <  2:777098/101‑1 (MQ=0)
                                                           GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCGACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGG      >  2:691844/1‑101 (MQ=12)
                                                               CCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC  <  2:3207787/101‑1 (MQ=0)
                                                                                                  ||||||||||                                                        
CCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA..................................................................  <  NC_014034/222065‑221968
............................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222128‑222073

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 41 ≤  ATCG