New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	221977 =	776 (5.280)	4 (0.030)	14/120	13.9	0.01	coding (680/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222089	147 (0.600)					coding (568/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA......................................................................................................................................  <  NC_014034/222057‑221977 .........................................................................................................................ACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG  <  NC_014034/222089‑221996                                                                                  ||||||||||||||||||||||||||||||||||||||||                                                                                               CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC                                                                                                                    <  1:307033/101‑1 (MQ=14)    GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCcc                                                                                                                 >  1:4690137/1‑99 (MQ=14)     ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                                                                                >  2:239454/1‑101 (MQ=0)       CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg                                                                                                              >  2:4946715/1‑99 (MQ=0)       CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg                                                                                                              <  1:2774506/101‑3 (MQ=2)          TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATC                                                                                                           <  2:4824913/101‑1 (MQ=0)                    CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                                                                                 <  2:3816479/101‑1 (MQ=2)                    CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                                                                                 <  2:3910294/101‑1 (MQ=2)                     CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                                                                                                >  1:2266744/1‑101 (MQ=0)                           ATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACGGAt                                                                                          >  2:276367/1‑100 (MQ=255)                                                        CCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCC                                                             >  2:1185449/1‑101 (MQ=255)                                                          cACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGA                                                           <  2:484697/100‑1 (MQ=255)                                                            CCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACC                                                         <  2:4164914/101‑1 (MQ=255)                                                            CCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACC                                                         >  2:4897534/1‑101 (MQ=255)                                                            CCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACC                                                         <  2:2266589/101‑1 (MQ=255)                                                             CGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCG                                                        >  2:2124913/1‑101 (MQ=255)                                                             CGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCG                                                        >  1:47992/1‑101 (MQ=255)                                                             CGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCG                                                        <  1:4015628/101‑1 (MQ=255)                                                              GATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGA                                                       >  2:2599326/1‑101 (MQ=255)                                                              GATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGA                                                       >  1:674829/1‑101 (MQ=255)                                                              GATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGA                                                       >  1:1277432/1‑101 (MQ=255)                                                                TCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATC                                                     >  1:3226503/1‑101 (MQ=255)                                                                 CCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCC                                                    <  1:4141639/101‑1 (MQ=255)                                                                 CCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCC                                                    >  1:4907258/1‑101 (MQ=255)                                                                 CCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCC                                                    >  2:2319669/1‑101 (MQ=255)                                                                   CACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCta                                                  >  1:4670624/1‑99 (MQ=255)                                                                   CACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCta                                                  >  1:2714492/1‑99 (MQ=255)                                                                              cgGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACC                                       >  2:1075842/3‑101 (MQ=255)                                                                               gGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCG                                      <  1:3263663/100‑1 (MQ=255)                                                                               gGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCG                                      <  2:2883528/100‑1 (MQ=255)                                                                               gGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCG                                      >  2:4065250/2‑101 (MQ=255)                                                                                 gCCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGAT                                    <  2:4918604/100‑1 (MQ=255)                                                                                 ACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGAT                                    <  2:4669019/101‑1 (MQ=255)                                                                                   CCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCC                                  >  2:1835309/1‑101 (MQ=255)                                                                                    CCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCC                                 <  2:2921417/101‑1 (MQ=255)                                                                                    CCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCC                                 <  1:755246/101‑1 (MQ=255)                                                                                    CCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCC                                 <  1:2599507/101‑1 (MQ=255)                                                                                    CCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCC                                 <  1:1835442/101‑1 (MQ=255)                                                                                     CACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCc                                >  1:2596446/1‑100 (MQ=255)                                                                                      cCGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCAC                               <  2:1277311/100‑1 (MQ=255)                                                                                      ACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCAC                               <  2:4568572/101‑1 (MQ=255)                                                                                      ACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCAC                               >  2:690998/1‑101 (MQ=255)                                                                                       CGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACG                              >  1:1188791/1‑101 (MQ=9)                                                                                       CGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACG                              >  2:3020936/1‑101 (MQ=9)                                                                                        GGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGG                             >  1:1379237/1‑101 (MQ=2)                                                                                        GGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGG                             >  1:2042265/1‑101 (MQ=2)                                                                                        GGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGG                             >  1:4205040/1‑101 (MQ=2)                                                                                          ATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGAt                           >  1:4892025/1‑100 (MQ=0)                                                                                                        ACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC             >  2:2718996/1‑101 (MQ=18)                                                                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  2:1047356/101‑1 (MQ=0)                                                                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       >  1:893711/1‑101 (MQ=2)                                                                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  1:557655/101‑1 (MQ=0)                                                                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  1:5006197/101‑1 (MQ=0)                                                                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  2:4820029/101‑1 (MQ=0)                                                                                                              CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  2:2121645/101‑1 (MQ=0)                                                                                                              CCCACGGATCCGACCGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC       <  2:3752593/101‑1 (MQ=0)                                                                                                               CCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG      <  1:3600135/101‑1 (MQ=0)                                                                                                               CCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG      >  1:3300812/1‑101 (MQ=2)                                                                                                               CCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG      <  2:1696599/101‑1 (MQ=0)                                                                                                                CACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA     <  2:871303/101‑1 (MQ=0)                                                                                                                 cCGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC    <  2:722785/100‑1 (MQ=0)                                                                                                                  CGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACg   <  2:610933/101‑2 (MQ=2)                                                                                                                  CGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACg   >  2:849232/1‑100 (MQ=2)                                                                                                                   GGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg  >  2:1648481/1‑99 (MQ=9)                                                                                  ||||||||||||||||||||||||||||||||||||||||                                                                                               CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA......................................................................................................................................  <  NC_014034/222057‑221977 .........................................................................................................................ACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG  <  NC_014034/222089‑221996 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG