New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 222019 =1163 (4.840)67 (0.280) 3/196 28.3 0.05 coding (638/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222027 1212 (4.950)coding (630/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC....................................................................................................  <  NC_014034/222120‑222019
....................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGAGCCCACGCATCCGACGCCCACC  <  NC_014034/222027‑221928
                                                                                                                                                                                                          
  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCC                                                                                                     <  1:871908/101‑1 (MQ=17)
  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCC                                                                                                     <  1:2484252/101‑1 (MQ=14)
   ggCCGATCCCGCGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCA                                                                                                    <  2:4053506/99‑1 (MQ=2)
   GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCA                                                                                                    >  1:3524548/1‑101 (MQ=11)
    ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAC                                                                                                   <  2:3068166/101‑1 (MQ=11)
    ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAC                                                                                                   <  1:1896828/101‑1 (MQ=11)
      CGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCCCGG                                                                                                 >  1:3967990/1‑101 (MQ=11)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCCACGGAC                                                                                               >  1:2462228/1‑101 (MQ=0)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAt                                                                                               >  2:3505279/1‑100 (MQ=11)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACAGAt                                                                                               >  2:917633/1‑100 (MQ=0)
         TCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCCCCGGACC                                                                                              >  1:1328632/1‑101 (MQ=0)
          CCCACGGATCCGACCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                             <  2:1899169/101‑1 (MQ=9)
          CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                             <  2:263828/101‑1 (MQ=14)
           CCACGGATCCGACCGATCCCACGGACCCGACGGACCTGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCG                                                                                            <  2:2586806/101‑1 (MQ=12)
           CCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCG                                                                                            <  2:4229141/101‑1 (MQ=17)
           CCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCG                                                                                            <  1:3239207/101‑1 (MQ=17)
              CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         <  2:5030160/101‑1 (MQ=17)
               GGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCG                                                                                        >  1:2392249/1‑101 (MQ=17)
                  TCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATC                                                                                     <  2:1860607/101‑1 (MQ=17)
                    CGACCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCC                                                                                   <  1:1635833/101‑1 (MQ=12)
                    CGACCGATCCCACGGACCTGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCC                                                                                   >  1:4544669/1‑101 (MQ=12)
                    CGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCC                                                                                   <  1:993528/101‑1 (MQ=17)
                    CGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCC                                                                                   <  1:4400442/101‑1 (MQ=17)
                     GACCGATCCCACGGGCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCA                                                                                  <  2:3967698/101‑1 (MQ=12)
                     GACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCA                                                                                  <  2:4240851/101‑1 (MQ=18)
                      cCCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCAC                                                                                 <  1:1030743/100‑1 (MQ=16)
                      ACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCAC                                                                                 <  2:1514056/101‑1 (MQ=18)
                        CGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGG                                                                               <  2:2392085/101‑1 (MQ=12)
                        CGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGG                                                                               >  1:1020335/1‑101 (MQ=17)
                        CGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGG                                                                               <  2:2919006/101‑1 (MQ=18)
                        CGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGG                                                                               >  1:2588672/1‑101 (MQ=17)
                         GATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCCACGGACCCGACCGACCCCACGGA                                                                              >  2:4600624/1‑101 (MQ=0)
                         GATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCCCGGA                                                                              >  1:1143651/1‑101 (MQ=12)
                         GATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGA                                                                              >  1:3951215/1‑101 (MQ=17)
                         GATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACCGATCCCACGGc                                                                              >  1:1934419/1‑100 (MQ=12)
                          gTCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGAc                                                                             <  2:4042010/100‑2 (MQ=18)
                            CCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCC                                                                           <  1:4931036/101‑1 (MQ=18)
                             CCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCG                                                                          <  2:4151308/101‑1 (MQ=17)
                             CCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCG                                                                          <  2:170793/101‑1 (MQ=17)
                             CCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCG                                                                          <  2:1712103/101‑1 (MQ=18)
                             CCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCG                                                                          >  1:2125042/1‑101 (MQ=17)
                             CCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCG                                                                          <  1:4887532/101‑1 (MQ=18)
                               ACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGAC                                                                        <  2:4525561/101‑1 (MQ=17)
                               ACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGAC                                                                        >  2:2480208/1‑101 (MQ=17)
                                 GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                      >  1:2003114/1‑101 (MQ=17)
                                 GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                      <  2:783493/101‑1 (MQ=18)
                                  GACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGA                                                                     >  1:435763/1‑101 (MQ=17)
                                     CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCC                                                                  <  1:4710059/101‑1 (MQ=18)
                                      CGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCC                                                                 <  1:2222265/101‑1 (MQ=21)
                                      CGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCC                                                                 <  2:2953171/101‑1 (MQ=21)
                                      CGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCC                                                                 >  2:840857/1‑101 (MQ=18)
                                      CGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCC                                                                 <  2:3460898/101‑1 (MQ=18)
                                      CGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCC                                                                 <  1:3913257/101‑1 (MQ=18)
                                       GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCc                                                                >  2:1001002/1‑100 (MQ=18)
                                       GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA                                                                <  2:245664/101‑1 (MQ=21)
                                       GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA                                                                <  1:4779939/101‑1 (MQ=25)
                                       GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA                                                                >  1:138569/1‑101 (MQ=21)
                                       GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA                                                                <  2:1047539/101‑1 (MQ=21)
                                       GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA                                                                >  1:3231168/1‑101 (MQ=21)
                                        ACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC                                                               <  1:1259457/101‑1 (MQ=25)
                                        ACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC                                                               <  1:1744486/101‑1 (MQ=37)
                                        ACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC                                                               <  2:2445929/101‑1 (MQ=25)
                                         CGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG                                                              <  2:4382459/101‑1 (MQ=37)
                                         CGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG                                                              <  2:3260573/101‑1 (MQ=25)
                                         CGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG                                                              <  1:4137226/101‑1 (MQ=37)
                                          cGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGG                                                             <  2:1649896/100‑1 (MQ=25)
                                           GACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA                                                            <  1:3126489/101‑1 (MQ=37)
                                                                                                                                                                                                          
CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC....................................................................................................  <  NC_014034/222120‑222019
....................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGAGCCCACGCATCCGACGCCCACC  <  NC_014034/222027‑221928

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG