New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 222062685 (3.140)59 (0.270) 3/178 27.1 0.10 coding (595/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 222090 = 410 (1.670)coding (567/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGT...................................................................................................  >  NC_014034/221952‑222062
....................................................................................................GTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGGCTGGTGGGATCGGTCGGACCGCTGTCGCCGCCGCCGGACAGACCCAGGCCGGCCAGACC  >  NC_014034/222090‑222188
                                                                                                                                                                                                                  
                        ggCGGTCGGGGCCGTGGGAGCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGAT                                                                                       <  1:1948654/99‑1 (MQ=0)
                        ATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGAT                                                                                       <  2:472191/101‑1 (MQ=1)
                        ATCGGGCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGAT                                                                                       <  1:4639456/101‑1 (MQ=0)
                         TCGGTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATC                                                                                      <  2:4952511/101‑1 (MQ=0)
                         TCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATC                                                                                      <  1:366654/101‑1 (MQ=0)
                         TCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATC                                                                                      <  1:973790/101‑1 (MQ=0)
                         TCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCAGTCGGATC                                                                                      >  1:4362360/1‑101 (MQ=0)
                          ccGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTCGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCC                                                                                     <  2:691844/99‑1 (MQ=12)
                          CGGTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCC                                                                                     <  2:3409405/101‑1 (MQ=0)
                          CGGTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCC                                                                                     >  1:2427144/1‑101 (MQ=0)
                          CGGTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCC                                                                                     <  1:2600570/101‑1 (MQ=0)
                          CGGTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCC                                                                                     <  1:761381/101‑1 (MQ=0)
                          CGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCC                                                                                     <  2:2834383/101‑1 (MQ=11)
                           GGTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                    >  1:39660/1‑101 (MQ=0)
                           GGTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                    >  1:3678473/1‑101 (MQ=0)
                           GGTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                    <  1:733085/101‑1 (MQ=0)
                           GGTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCG                                                                                    >  2:1222591/1‑101 (MQ=0)
                            GTCGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGT                                                                                   >  2:777098/1‑101 (MQ=0)
                            GTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGT                                                                                   <  1:667557/101‑1 (MQ=17)
                             TCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTa                                                                                  >  1:139366/1‑100 (MQ=17)
                             TCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTa                                                                                  >  2:4994260/1‑100 (MQ=17)
                              CGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGG                                                                                 <  1:653991/101‑1 (MQ=0)
                              CGGGTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGG                                                                                 >  1:4180069/1‑101 (MQ=0)
                              CGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTag                                                                                 >  2:4877827/1‑99 (MQ=17)
                               GGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGG                                                                                >  2:3303988/1‑101 (MQ=12)
                               GGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGG                                                                                >  1:1307073/1‑101 (MQ=12)
                               GGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGNCGGATCCGTGGGATCGGTCGGATCCGTAGG                                                                                >  1:3021164/1‑101 (MQ=12)
                                GGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGA                                                                               >  1:592315/1‑101 (MQ=9)
                                GGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGA                                                                               >  1:371912/1‑101 (MQ=9)
                                 GTCCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGAT                                                                              <  1:4820356/101‑1 (MQ=0)
                                 GTCCGTGGGCTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGAT                                                                              <  2:487799/101‑1 (MQ=9)
                                  TCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATC                                                                             <  1:3325267/101‑1 (MQ=0)
                                  TCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATC                                                                             <  1:3195730/101‑1 (MQ=0)
                                  TCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATC                                                                             <  1:3653983/101‑1 (MQ=0)
                                   gCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCG                                                                            <  1:1569239/100‑1 (MQ=0)
                                   CCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCG                                                                            <  2:4946715/101‑1 (MQ=0)
                                   CCGTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCG                                                                            >  1:2774506/1‑101 (MQ=2)
                                    CGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGGCGGATCCGTGGGATCGGTCGGATCCGCGGGATCGGTCGGATCCGTGGGATCGG                                                                           >  1:2170178/1‑101 (MQ=0)
                                    CGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGG                                                                           >  1:1042799/1‑101 (MQ=0)
                                    CGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGG                                                                           <  2:2116089/101‑1 (MQ=2)
                                    CGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGG                                                                           >  1:1185566/1‑101 (MQ=0)
                                     GTGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGT                                                                          <  2:239454/101‑1 (MQ=0)
                                     GTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGT                                                                          >  2:3316633/1‑101 (MQ=0)
                                      gGGGGTCCGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTC                                                                         <  1:4690137/100‑1 (MQ=14)
                                      gGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTC                                                                         <  1:3782023/100‑1 (MQ=2)
                                       GGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCG                                                                        >  2:4126767/1‑101 (MQ=0)
                                        GGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGG                                                                       >  2:3190443/1‑101 (MQ=0)
                                        GGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGG                                                                       <  1:1405262/101‑1 (MQ=2)
                                         ggtccGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGG                                                                      >  1:307033/6‑101 (MQ=14)
                                          ATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGGGT                                                                     <  2:3150690/101‑1 (MQ=2)
                                           TCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGGGTC                                                                    <  2:272983/101‑1 (MQ=0)
                                            CGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGGGTCC                                                                   <  1:2473067/101‑1 (MQ=0)
                                            CGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGGGTCC                                                                   <  2:744188/101‑1 (MQ=0)
                                              GTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGCCGGATCCGCGGGATCGGTCGGGTCCGc                                                                 >  1:2944291/1‑100 (MQ=12)
                                              GTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGGGTCCGT                                                                 <  2:4813974/101‑1 (MQ=0)
                                              GTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGGGTCCGT                                                                 <  1:852812/101‑1 (MQ=0)
                                               TCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGGGTCCGTa                                                                <  2:201968/101‑2 (MQ=2)
                                                CGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTAGGATCGGTCGGGTCCGTag                                                               >  2:2965383/1‑99 (MQ=9)
                                                 GGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGGCGGATCCGTGGGATCGGGCGGGTCCGTGGG                                                              >  2:3423102/1‑101 (MQ=0)
                                                                                                                                                                                                                  
GGTCGGATCGGTCGGGTCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGT...................................................................................................  >  NC_014034/221952‑222062
....................................................................................................GTCGGGTCCGTGGGATCGGTCGGATCCGTGGGATCGGTCGGGTCCGTGGGGCTGGTGGGATCGGTCGGACCGCTGTCGCCGCCGCCGGACAGACCCAGGCCGGCCAGACC  >  NC_014034/222090‑222188

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 41 ≤  ATCG