New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	222079 =	384 (1.980)	46 (0.240)	11/158	19.3	0.14	coding (578/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222129	189 (0.770)					coding (528/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

CCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC..........................................................................  <  NC_014034/222133‑222079 ............................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGG  <  NC_014034/222129‑222077                                                        |||||||||||||||||||||                                                      ccgatCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCCCG                              >  1:4862407/6‑101 (MQ=0)   gatCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCAATCCCACGGA                            >  1:3687281/4‑101 (MQ=0)     tCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAcc                          <  2:478162/100‑3 (MQ=17)       CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCG                        >  2:141250/1‑101 (MQ=2)       CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCG                        >  1:773280/1‑101 (MQ=0)        CACGGACCCGACCGATCCCACGAATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGA                       <  2:2514352/101‑1 (MQ=12)         cgGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                      <  1:3456392/99‑1 (MQ=9)         agtGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                      <  1:2794953/98‑1 (MQ=12)         ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                      >  2:2346175/1‑101 (MQ=17)         ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCCATCCCACGGACCCGAC                      >  2:4531204/1‑101 (MQ=12)          ccGACCCGGCCGATCCCACGGATCCGACCCATCCCACGGACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                     <  2:3507528/99‑1 (MQ=0)          CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                     <  2:530881/101‑1 (MQ=11)          CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                     <  2:3300550/101‑1 (MQ=11)          CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                     <  2:3429960/101‑1 (MQ=11)          CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                     <  2:3493360/101‑1 (MQ=9)           gcACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                    <  2:1007474/99‑1 (MQ=0)           GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                    >  2:5005867/1‑101 (MQ=11)           GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                    >  1:2560862/1‑101 (MQ=11)           GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                    >  2:673328/1‑101 (MQ=11)           GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                    <  1:2522881/101‑1 (MQ=12)            gcCCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA                   <  1:357538/99‑1 (MQ=19)            GACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA                   >  1:1458039/1‑101 (MQ=0)            GACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA                   <  2:521374/101‑1 (MQ=12)             gCCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAT                  <  2:1836190/100‑1 (MQ=0)              CCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATC                 <  2:3384951/101‑1 (MQ=0)               CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACGGATCC                >  2:4188742/1‑101 (MQ=12)               CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC                <  1:3437523/101‑1 (MQ=0)               CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC                >  2:3358291/1‑101 (MQ=0)               CCGACCGATCCCACGGACCCGACCGCTCCCACGGACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC                <  2:2184969/101‑1 (MQ=0)                    CGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGG           >  2:4428855/1‑101 (MQ=0)                    CGATCCCACGGATCCGACCGAACCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGG           <  1:939228/101‑1 (MQ=2)                     GATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAGCCGACCGATCCCACGGA          >  2:2279037/1‑101 (MQ=0)                     GATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGA          >  1:1473594/1‑101 (MQ=2)                        CCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGCTCCCACGGACCC       >  2:2475702/1‑101 (MQ=0)                        CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC       <  1:348084/101‑1 (MQ=21)                        CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC       <  1:3729493/101‑1 (MQ=21)                        CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC       <  2:4401227/101‑1 (MQ=21)                         CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCG      <  1:2730048/101‑1 (MQ=12)                         CCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACCGACCCG      >  2:4441499/1‑101 (MQ=0)                         CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG      <  1:1052717/101‑1 (MQ=21)                         CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG      <  2:2901441/101‑1 (MQ=21)                         CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCG      <  2:138359/101‑1 (MQ=21)                          CACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGA     <  2:1431502/101‑1 (MQ=12)                          CACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGc     >  1:4825240/1‑100 (MQ=25)                            CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACc   <  1:766892/101‑2 (MQ=12)                             GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACcg  <  1:2444676/101‑3 (MQ=18)                                                        |||||||||||||||||||||                                                      CCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC..........................................................................  <  NC_014034/222133‑222079 ............................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGG  <  NC_014034/222129‑222077 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG