New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 2232333190 (0.890)3 (0.010) 2/174 27.9 0.01 coding (2175/2772 nt) RCAP_rcc02068 ice nucleation protein repeat family protein
?NC_014034 3456294 = 204 (0.830)coding (866/1419 nt) RCAP_rcc03256 cytochrome P450 family protein
Rejected: Position hash score below cutoff.

AGCTCAGCCCCTTGATCGCAGCCGTCGAGAGCGCGGCGAAATCCGCCGTCTGCAGCGCGGAGATCTGCGCCGTGCTGAGCGCCGCCACCTGCGTCGAGCTCAGCGCGGCGGCC....................................................................................................  >  NC_014034/2232221‑2232333
....................................................................................................CAGCGCGGCGGCCCCGGTTTCATGCCCGGCCAAAAGGAAGATGCCGACCTGATCGACCATCTCGCCCGGGCTGAAGCACTTGCCATCCTCGGGGTCGGGGGTGGACATGATCC  >  NC_014034/3456294‑3456393
                                                                                                                                                                                                                     
                CGCAGCCGTCGAGAGCGCGGCGAAATCCGCCGTCTGCAGCGCGGAGATCTGCGCCGTGCTGAGCGCCGCCACCTGCGTCGAGCTCAGCGCGGCGGCCCgac                                                                                                  >  1:3435459/1‑98 (MQ=255)
                                                                        tctTGAGCGCCGCCACCTGCGTCGAGCTCAGCGCGGCGGCCCCGGTTTCATGCCCGGCCAAAAGGAAGATGCCGACCTGATCGACCATCTCGCCCGGGCTG                                          <  1:934350/98‑1 (MQ=255)
                                                                           TGAGCGCCGCCACCTGCGTCGAGCTCAGCGCGGCGGCCCCGGTTTCATGCCCGGCCAAAAGGAAGATGCCGACCTGATCGACCATCTCGCCCGGGCTGAga                                       >  2:934245/1‑99 (MQ=255)
                                                                                                                                                                                                                     
AGCTCAGCCCCTTGATCGCAGCCGTCGAGAGCGCGGCGAAATCCGCCGTCTGCAGCGCGGAGATCTGCGCCGTGCTGAGCGCCGCCACCTGCGTCGAGCTCAGCGCGGCGGCC....................................................................................................  >  NC_014034/2232221‑2232333
....................................................................................................CAGCGCGGCGGCCCCGGTTTCATGCCCGGCCAAAAGGAAGATGCCGACCTGATCGACCATCTCGCCCGGGCTGAAGCACTTGCCATCCTCGGGGTCGGGGGTGGACATGATCC  >  NC_014034/3456294‑3456393

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG