New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2287727	2 (0.010)	23 (0.150)	7/126	18.9	0.23	intergenic (‑124/+111)	RCAP_rcc02125/acsA1	hypothetical protein/acetate‑‑CoA ligase
	?	NC_014034	= 2490469	151 (0.620)					intergenic (‑82/+10)	soxD/soxB	sarcosine oxidase subunit delta/sarcosine oxidase subunit beta
Rejected: Position hash score below cutoff.

GTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGG............................................................................  >  NC_014034/2287691‑2287727 ..........................................................................CCCTTTCATCTTGCCCGAAATATCCCGCGGGGGTCCGGG  <  NC_014034/2490469‑2490431                                      |||||||||||||||||||||||||||||||||||||                                        taAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCG              >  2:863880/3‑101 (MQ=255) taAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCG              >  2:737502/3‑101 (MQ=255) taAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCG              >  1:4706742/3‑101 (MQ=255)  aAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGC             >  2:2523511/2‑101 (MQ=255)     ctGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGG          >  1:1464540/3‑101 (MQ=255)      tGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGG         >  2:3872198/2‑101 (MQ=255)      tGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGG         <  1:694/100‑1 (MQ=255)       GCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGG        >  2:2989219/1‑101 (MQ=255)        CGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGg       >  1:3626038/1‑100 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGgg      >  2:2620000/1‑99 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGgg      >  2:1290320/1‑99 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg      >  2:1745469/1‑100 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAACCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg      >  1:680351/1‑100 (MQ=255)          GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga     <  1:457978/101‑3 (MQ=255)           GGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaa    <  1:2590741/101‑4 (MQ=255)           GGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaa    >  2:2330494/1‑98 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGagaat   >  1:3088293/1‑96 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat   <  1:1978577/101‑5 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat   <  1:3391160/101‑5 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat   <  1:3292058/101‑5 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat   >  1:1626006/1‑97 (MQ=255)             GTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaatt  <  1:3981282/101‑6 (MQ=255)             GTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaatt  >  2:329061/1‑96 (MQ=255)                                      |||||||||||||||||||||||||||||||||||||                                        GTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGG............................................................................  >  NC_014034/2287691‑2287727 ..........................................................................CCCTTTCATCTTGCCCGAAATATCCCGCGGGGGTCCGGG  <  NC_014034/2490469‑2490431 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG