New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330175	46 (0.190)	43 (0.180)	6/196	25.7	0.29	intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 2341510	168 (0.690)					intergenic (‑61/+9)	purQ/purS	phosphoribosylformylglycinamidine synthase subunit PurQ/phosphoribosylformylglycinamidine synthase subunit PurS
Rejected: Position hash score below cutoff.

TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCG....................................................................................................  >  NC_014034/2330074‑2330175 .....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTGC  <  NC_014034/2341510‑2341411                                                                                                                                                                                                               GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGGCCC.CGGGGG                                                                                                     >  1:1126590/1‑101 (MQ=0)    GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGG                                                                                                    >  2:4251068/1‑101 (MQ=1)     CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGG                                                                                                   >  1:4684641/1‑101 (MQ=1)      TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGG                                                                                                  >  2:4047545/1‑101 (MQ=1)      TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGG                                                                                                  >  1:4153193/1‑101 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGg                                                                                                 >  1:1180639/1‑100 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGC                                                                                                 <  1:21854/101‑1 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGC                                                                                                 >  1:564971/1‑101 (MQ=1)        GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGGCGGGGGg                                                                                                 >  2:1833358/1‑100 (MQ=0)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGGTCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCtcc                                                                                              <  1:771653/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCtcc                                                                                              <  2:572004/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCtcc                                                                                              <  1:4081553/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCtcc                                                                                              <  2:3711830/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCtcc                                                                                              <  1:1201483/101‑4 (MQ=1)           CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGGGGGGCcc                                                                                             >  1:4793234/1‑99 (MQ=0)             CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGGGGgggggcg                                                                                           >  2:4254407/1‑94 (MQ=0)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                        <  2:2559844/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                        <  2:4748093/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                        <  1:905673/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                        <  2:1686544/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCCCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                        <  2:741082/101‑1 (MQ=1)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGGGCCCCCCCCc                                                                                       >  2:2877786/1‑100 (MQ=0)                  AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGGGGGGCCGCCCCCcc                                                                                      >  2:3886890/1‑99 (MQ=0)                  AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGc                                                                                      >  2:4562056/1‑100 (MQ=1)                  AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGc                                                                                      >  2:1953783/1‑100 (MQ=1)                  AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGc                                                                                      >  2:3131150/1‑100 (MQ=1)                       CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCC                                                                                 <  1:4154730/101‑1 (MQ=1)                       CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCC                                                                                 <  1:4251385/101‑1 (MQ=1)                        GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCC                                                                                <  2:2863140/101‑1 (MQ=1)                        GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCC                                                                                <  2:4462890/101‑1 (MQ=1)                         GCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCG                                                                               <  2:1830716/101‑1 (MQ=1)                           AACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGC                                                                             <  1:4072035/101‑1 (MQ=1)                              GGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTA                                                                          <  2:90493/101‑1 (MQ=1)                              GGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTA                                                                          <  2:4125038/101‑1 (MQ=1)                              GGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTA                                                                          <  1:1451432/101‑1 (MQ=1)                                CGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATT                                                                        <  1:669691/101‑1 (MQ=1)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                       <  2:4447053/101‑1 (MQ=1)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                       <  1:81999/101‑1 (MQ=1)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                       <  1:631406/101‑1 (MQ=1)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                       <  2:4919730/101‑1 (MQ=1)                                  CGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTG                                                                      <  2:725545/101‑1 (MQ=1)                                  CGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTG                                                                      <  1:2995122/101‑1 (MQ=1)                                  CGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTG                                                                      <  2:3496154/101‑1 (MQ=1)                                                                                                                                                                                                             TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCG....................................................................................................  >  NC_014034/2330074‑2330175 .....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTGC  <  NC_014034/2341510‑2341411 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG