New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330175	46 (0.190)	17 (0.070)	2/198	29.6	0.12	intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	2577165 =	195 (0.800)					intergenic (+87/‑342)	fdx/purU	ferredoxin VI/formyltetrahydrofolate deformylase
Rejected: Position hash score below cutoff.

GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCG...............  >  NC_014034/2330076‑2330175 ....................................................................................................GGGGCCGCCCCCGCAC  >  NC_014034/2577165‑2577179                                                                                                                      GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGGCCC.CGGGGG                >  1:1126590/1‑101 (MQ=0)  GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGG               >  2:4251068/1‑101 (MQ=1)   CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGG              >  1:4684641/1‑101 (MQ=1)    TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGg             >  2:4047545/1‑100 (MQ=1)    TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGg             >  1:4153193/1‑100 (MQ=1)     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGgg            >  1:1180639/1‑99 (MQ=1)     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGgc            >  1:564971/1‑99 (MQ=1)     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGgc            <  1:21854/101‑3 (MQ=1)      GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGGCGGGGgg            >  2:1833358/1‑99 (MQ=0)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGGTCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGgctcc         <  1:771653/101‑6 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGgctcc         <  1:4081553/101‑6 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGgctcc         <  2:3711830/101‑6 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGgctcc         <  1:1201483/101‑6 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGgctcc         <  2:572004/101‑6 (MQ=1)         CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGGGGGGCCC        >  1:4793234/1‑101 (MQ=0)           CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGGGggggggcg      >  2:4254407/1‑93 (MQ=0)               CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGGGCCCCCcccc  >  2:2877786/1‑97 (MQ=0)                                                                                                                      GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCG...............  >  NC_014034/2330076‑2330175 ....................................................................................................GGGGCCGCCCCCGCAC  >  NC_014034/2577165‑2577179 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG